PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G06220.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 267aa    MW: 28815 Da    PI: 10.4098
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G06220.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.6e-172671147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  ONIVA11G06220.1 26 RGHWRPGEDEKLRQLVEKYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 71
                     899*****************************.***********996 PP
2Myb_DNA-binding62.58.7e-2079122247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++T+eE+e+l+ a++ +G++ W++Iar+++ gRt++ +k++w+ +
  ONIVA11G06220.1  79 RPFTEEEEERLLAAHRHHGNK-WALIARHFP-GRTDNAVKNHWHVV 122
                      69*******************.*********.***********976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MASSSTTNTS DGAGKPASSS SSACPRGHWR PGEDEKLRQL VEKYGPQNWN SIAEKLEGRS  60
GKSCRLRWFN QLDPRINKRP FTEEEEERLL AAHRHHGNKW ALIARHFPGR TDNAVKNHWH  120
VVRARRSRER SRLLARAAAA AAHPPPFSSY ASQLDFSGGG ASSGARNSSL CFGFGMINRS  180
SSSSSSPAAA PFLIKSFNGT SYGTLLPATT SMAAAAQPVS TITFSSTPMR ETLELMDAGG  240
HENHGDVDGG GDKRKGVPYF DFLGVGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.13e-49MYB family protein