PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA10G16530.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 409aa MW: 44214.2 Da PI: 8.6772

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA10G16530.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.1	4.1e-13	3	51	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+l+++ +++G g +W + + +g+ R++ +c+srw++yl ONIVA10G16530.1 3 KGKWSKEEDDLIKNHMEKYGIGrSWQALSDALGLQRCGRSCRSRWLNYL 51 79****************999**********************97 PP
2	Myb_DNA-binding	32	2.9e-10	58	101	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g +++ E+ ++ + + G+ W++Ia+ ++ gRt+ +k++w++ ONIVA10G16530.1 58 GDFSPAEERIICKMYSKKGSS-WSAIAAQLP-GRTDLAVKNYWNST 101 679**************99.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MKKGKWSKEE DDLIKNHMEK YGIGRSWQAL SDALGLQRCG RSCRSRWLNY LRPGLKHGDF 60 SPAEERIICK MYSKKGSSWS AIAAQLPGRT DLAVKNYWNS TLKKRFPAAA AARSTAAARR 120 RHRPAASATT SSDDDDDVDV DDATPPGLAL VVYSDGSTAA AAAAGELAPY SISSPAATAD 180 AAEEEEPIAA VPISTCILAL PPPPPPPPPP PSDATGGEVS IPCFPFSPLP FIEPDLPELT 240 WTTDLDDITA TFDAAACRYP KRPHPITPDS PRLPKLPAIA GFDDVQSFFI CLRYNTSPFL 300 LARATAAPPA AAADRCLAGR RCLYSTTPPP PLSPLHWRCS RRDPELGADV SALLLRGRLG 360 ARQLFDELPH RVRWRRGYLR AAFAASVSNL NARDGHRGVK AEAMKSSAQ

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MKKGKWSKEE DDLIKNHMEK YGIGRSWQAL SDALGLQRCG RSCRSRWLNY LRPGLKHGDF  60
SPAEERIICK MYSKKGSSWS AIAAQLPGRT DLAVKNYWNS TLKKRFPAAA AARSTAAARR  120
RHRPAASATT SSDDDDDVDV DDATPPGLAL VVYSDGSTAA AAAAGELAPY SISSPAATAD  180
AAEEEEPIAA VPISTCILAL PPPPPPPPPP PSDATGGEVS IPCFPFSPLP FIEPDLPELT  240
WTTDLDDITA TFDAAACRYP KRPHPITPDS PRLPKLPAIA GFDDVQSFFI CLRYNTSPFL  300
LARATAAPPA AAADRCLAGR RCLYSTTPPP PLSPLHWRCS RRDPELGADV SALLLRGRLG  360
ARQLFDELPH RVRWRRGYLR AAFAASVSNL NARDGHRGVK AEAMKSSAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37780.1	5e-40	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA10G16530.1