PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Link Out |

Basic Information? help Back to Top

TF ID

ONIVA10G04750.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 572aa MW: 62322.1 Da PI: 8.7426

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA10G04750.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.1	2.7e-10	64	95	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g WT+eEde l +av+ + g++Wk+I ++ + ONIVA10G04750.1 64 KGGWTPEEDETLRKAVEAYKGRNWKKIEQRYN 95 688************************99876 PP
2	Myb_DNA-binding	45.2	2.2e-14	111	150	8	48
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 Ed++++d+vk++G+ W+ Ia+ ++ gR +kqc++rw+++l ONIVA10G04750.1 111 EDDQIIDLVKKYGPTKWSVIAKALP-GRIGKQCRERWHNHL 150 9**********************.***********97 PP
3	Myb_DNA-binding	60.4	3.9e-19	156	199	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WTteE++ l++a++ +G++ W+ Ia+ ++ gRt++++k++w++ ONIVA10G04750.1 156 KDAWTTEEEQALINAHRIYGNK-WAEIAKVLP-GRTDNSIKNHWNS 199 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence
MAMVEQEGCV ENRQPLAASS SSVSDGSSYG GGGGGLAQMS PPVSSSANSI SGLRRTSGPI 60 RRAKGGWTPE EDETLRKAVE AYKGRNWKKI EQRYNACIDG KRFLILNLSK EDDQIIDLVK 120 KYGPTKWSVI AKALPGRIGK QCRERWHNHL NPEIRKDAWT TEEEQALINA HRIYGNKWAE 180 IAKVLPGRTD NSIKNHWNSS LRKKQDMYNT SNNMVVPKLL VHDKFKDKPK LMAMEGHLDL 240 NKAPIINSKD QPGTAHRSNC SGFLSRSSLP TAQPLTSREA SVVDGSAVTL VAQALESDSV 300 RGKGLEIDSV HEKGLEVNSA PDHTGNSWTI QLEAAPSKGE AELSLKNEAR SLGPLCYQIP 360 NMEDVVPVSS SLFSDHLTGN HTSEHCGDDI LSPAGCTTPP PTKGKLTSQL SVDSILKSAA 420 NSFPGTPSIL KRRKRDKSTP VSASEMKISG SNTDRFYTPM GMEPATATPE SFKTTSFLSL 480 GSLDGSVKSF DVSPQYRARS KRMALTKTVE KQLDFSSDGL DTCGSEILNS SCNNSQSTLS 540 ITEAPKLKEK EHAVQLENLT KNFAHTTNLD VT

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence

MAMVEQEGCV ENRQPLAASS SSVSDGSSYG GGGGGLAQMS PPVSSSANSI SGLRRTSGPI  60
RRAKGGWTPE EDETLRKAVE AYKGRNWKKI EQRYNACIDG KRFLILNLSK EDDQIIDLVK  120
KYGPTKWSVI AKALPGRIGK QCRERWHNHL NPEIRKDAWT TEEEQALINA HRIYGNKWAE  180
IAKVLPGRTD NSIKNHWNSS LRKKQDMYNT SNNMVVPKLL VHDKFKDKPK LMAMEGHLDL  240
NKAPIINSKD QPGTAHRSNC SGFLSRSSLP TAQPLTSREA SVVDGSAVTL VAQALESDSV  300
RGKGLEIDSV HEKGLEVNSA PDHTGNSWTI QLEAAPSKGE AELSLKNEAR SLGPLCYQIP  360
NMEDVVPVSS SLFSDHLTGN HTSEHCGDDI LSPAGCTTPP PTKGKLTSQL SVDSILKSAA  420
NSFPGTPSIL KRRKRDKSTP VSASEMKISG SNTDRFYTPM GMEPATATPE SFKTTSFLSL  480
GSLDGSVKSF DVSPQYRARS KRMALTKTVE KQLDFSSDGL DTCGSEILNS SCNNSQSTLS  540
ITEAPKLKEK EHAVQLENLT KNFAHTTNLD VT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	432	437	RRKRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	9e-79	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA10G04750.1