PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA10G00410.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HD-ZIP

Protein Properties

Length: 298aa MW: 33154.5 Da PI: 8.479

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA10G00410.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.1	6.3e-18	144	198	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k ONIVA10G00410.1 144 RKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 198 788899***********************************************98 PP
2	HD-ZIP_I/II	125.2	2.9e-40	144	232	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr + ONIVA10G00410.1 144 RKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLR-A 232 69*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence
MPCFLSYMYG PPCPHSPSPF FLISHRLYSY LPSSLSRARA STQERGREVW WMAQDDEDVG 60 LALGLSLGSG GHRRQRESRD EAPSSAAASL LTLRLPAESG GQPQVVVKRE VVRAEEEEYE 120 YEYERALYSS SAAAADDDEG CNSRKKLRLS KEQSALLEDR FKEHSTLNPK QKVALAKQLN 180 LRPRQVEVWF QNRRARTKLK QTEVDCELLK RCCETLTEEN RRLHRELQQL RALTHSTAAG 240 FFMATTLPVP AATLSICPSC ERLATAAAAG ASPTAAADRT NKPTAPHLFS PFAKSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	149	SRKKLRL
2	193	201	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	4e-58	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	ONIVA10G00410.1