PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA09G17070.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

CO-like

Protein Properties

Length: 462aa MW: 49315.7 Da PI: 6.1015

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA09G17070.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16.8	1.4e-05	5	43	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg.......H 37 C+ ++e + l+C+ + lC C + H g H ONIVA09G17070.1 5 SCDYCGEAAAALHCRADAARLCVACDRHVH-GanalsrrH 43 7****99*****************99.435555556 PP
2	CCT	42.5	2.3e-15	423	451	16	44
CCT 16 kFeKkirYesRKavAesRpRvKGrFvkqa 44 +++K+irYesRK +A++R RvKGrFv+++ ONIVA09G17070.1 423 RYDKHIRYESRKMRADTRTRVKGRFVRAT 451 79************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MTWRSCDYCG EAAAALHCRA DAARLCVACD RHVHGANALS RRHVRAPLCA RCEARPAAAR 60 VAAVAGAGGC GGGGEARFLC AGCADDDGAE AARVPVVGFS GCPGAAELAA SWGLDLGGGG 120 GRDEFEEDPF FPEAGYPMLA ADRVLRDMYV PCDPPPEVAA GGRGRRLKGD SLCHQLAELA 180 RREMESAPAQ ANSGSISPSA RRGSAAAIRH EAAAAAAAQR ATLPYKSTPV TEAAGCGDVG 240 NGEQFTDDNE LVWQRTAPSD PPCQIWDFNL GKSRDHDEHS ALELHFGPKD GGFMIKSYND 300 MIEEVSSSSR KDLQYIYDST YSFATEDIVS ANIYQLTPKQ LSTATSGNRR HKNEQHGLTN 360 DGPSSSRIVD VDRTLNSSPE EVAAVLAGEN CITDQTVTGA DQRNSLKIDS KTIAMNRDNA 420 MQRYDKHIRY ESRKMRADTR TRVKGRFVRA TDIFNVGGGD GG

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MTWRSCDYCG EAAAALHCRA DAARLCVACD RHVHGANALS RRHVRAPLCA RCEARPAAAR  60
VAAVAGAGGC GGGGEARFLC AGCADDDGAE AARVPVVGFS GCPGAAELAA SWGLDLGGGG  120
GRDEFEEDPF FPEAGYPMLA ADRVLRDMYV PCDPPPEVAA GGRGRRLKGD SLCHQLAELA  180
RREMESAPAQ ANSGSISPSA RRGSAAAIRH EAAAAAAAQR ATLPYKSTPV TEAAGCGDVG  240
NGEQFTDDNE LVWQRTAPSD PPCQIWDFNL GKSRDHDEHS ALELHFGPKD GGFMIKSYND  300
MIEEVSSSSR KDLQYIYDST YSFATEDIVS ANIYQLTPKQ LSTATSGNRR HKNEQHGLTN  360
DGPSSSRIVD VDRTLNSSPE EVAAVLAGEN CITDQTVTGA DQRNSLKIDS KTIAMNRDNA  420
MQRYDKHIRY ESRKMRADTR TRVKGRFVRA TDIFNVGGGD GG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	2e-24	CO-like family protein

Link Out ? help Back to Top
Ensembl	ONIVA09G17070.1