PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Link Out |

Basic Information? help Back to Top

TF ID

ONIVA09G10010.3

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 542aa MW: 53536 Da PI: 7.6292

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA09G10010.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	8e-12	300	345	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq ONIVA09G10010.3 300 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 345 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MQPTTREMQA MAAAAAAGQI SLDDLRNGGG VAANAGGGGG GVHDDFLDQM LSSLPPSAWP 60 DLAAGKAAED DAEGMHHHHH HHQQQFGGPY DESAMLASRL RQHQISGGGG GGGGGAAAVK 120 QMVLQQLADL RQGHHMMLQG LGGRSPAGGG GGGGDGGLLL PLTLGSGGSG GDVQALLKAA 180 AANSAGGGDA GGVYGGGFAG SLHQQQQHFQ PHPQVLINSL ADISHGSPRL KTLKHRPCVC 240 LQTAPTIPTQ SFGGGGGGGG GGTASGGGAA QPQAGAAGGG APAPPRQRVR ARRGQATDPH 300 SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKA STYTKLLIHV 360 LSMSRLGGAA AVAPLVADMS SEGRGGGAAN GGAPAAAAAA AGSDSLTVTE QQVAKLMEED 420 MGTAMQYLQG KGLCLMPISL ASAISSATCH LRPPVVAAAA AQQFPAGLGA AAAAAHHHQL 480 SAAAAAAAAM RGHLPGLNAD GSVPASPSMS VLTAQSAMAN GGGGAADGEG SQLKDAASVS 540 KP

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MQPTTREMQA MAAAAAAGQI SLDDLRNGGG VAANAGGGGG GVHDDFLDQM LSSLPPSAWP  60
DLAAGKAAED DAEGMHHHHH HHQQQFGGPY DESAMLASRL RQHQISGGGG GGGGGAAAVK  120
QMVLQQLADL RQGHHMMLQG LGGRSPAGGG GGGGDGGLLL PLTLGSGGSG GDVQALLKAA  180
AANSAGGGDA GGVYGGGFAG SLHQQQQHFQ PHPQVLINSL ADISHGSPRL KTLKHRPCVC  240
LQTAPTIPTQ SFGGGGGGGG GGTASGGGAA QPQAGAAGGG APAPPRQRVR ARRGQATDPH  300
SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKA STYTKLLIHV  360
LSMSRLGGAA AVAPLVADMS SEGRGGGAAN GGAPAAAAAA AGSDSLTVTE QQVAKLMEED  420
MGTAMQYLQG KGLCLMPISL ASAISSATCH LRPPVVAAAA AQQFPAGLGA AAAAAHHHQL  480
SAAAAAAAAM RGHLPGLNAD GSVPASPSMS VLTAQSAMAN GGGGAADGEG SQLKDAASVS  540
KP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	150	GGRSPAGGG
2	305	310	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	9e-46	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA09G10010.3