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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | ONIVA09G09810.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family | MYB | ||||||||
| Protein Properties | Length: 320aa MW: 33101.8 Da PI: 7.8234 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 53 | 8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd+ lv +++++G g+W++++ g+ R+ k+c++rw +yl
ONIVA09G09810.1 14 KGPWTPEEDLMLVSYIQEHGAGNWRAVPTNTGLMRCSKSCRLRWTNYL 61
79********************************************97 PP
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| 2 | Myb_DNA-binding | 52.5 | 1.2e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T++E++l+v++ ++lG++ W++Ia++++ Rt++++k++w+++l
ONIVA09G09810.1 67 RGNFTEQEEKLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112
89********************.*********.************996 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 320 aa Download sequence |
MGRPPCCDKV GVKKGPWTPE EDLMLVSYIQ EHGAGNWRAV PTNTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TEQEEKLIVH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLKKMQ 120 AAGGGEDGGA ASEGGGGRGD GDGGGKSVKA AAPKGQWERR LQTDIHTARQ ALRDALSLDH 180 PDPSPATAAT PAGSSAAYAS SADNIARLLQ GWMRPGGGGG GNGKGPEASG STSTTATTQQ 240 QPQCSGEGAA SASASASQSG AAAAATAQTP ECSTETSKMA TGGGAGGPAP AFSMLESWLL 300 DDGGMGLMDV VPLGDPSEFF |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G47600.1 | 7e-92 | MYB family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | ONIVA09G09810.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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