PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA08G23410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 198aa MW: 21875.7 Da PI: 5.2568 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.6 | 8.8e-38 | 45 | 144 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaC++lrr+Ca+dCvlap fpa++p+++a+vh++FGasnv +ll++lp er +a++++++eA +r++dPvyG++g+i++lq++++ ++ el ONIVA08G23410.1 45 RCAACRYLRRRCADDCVLAPFFPASRPHRYACVHRVFGASNVARLLQSLPMAERGNAANTMAMEAYWRVQDPVYGCTGIINRLQEEIRAVQCEL 138 6********************************************************************************************* PP DUF260 95 allkee 100 a+++++ ONIVA08G23410.1 139 ARTQAH 144 *99986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence |
MIDSAVSSPN PAKIFGDPAP KISRTMQDPE EDDDDQQQQH PAARRCAACR YLRRRCADDC 60 VLAPFFPASR PHRYACVHRV FGASNVARLL QSLPMAERGN AANTMAMEAY WRVQDPVYGC 120 TGIINRLQEE IRAVQCELAR TQAHLAIAVA SSQQPPPPPP PPPLPSPPPP QQQQQQQEEQ 180 SPPPLLDPAD EFLNLDGL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G26660.1 | 8e-32 | LBD family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | ONIVA08G23410.1 |