PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA08G18260.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 200aa MW: 21628.3 Da PI: 6.9148

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G18260.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.4	2.1e-15	14	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT+eEde l +av+++ +W+ Ia ++ +R +k+c++rw ++l ONIVA08G18260.1 14 KTPWTQEEDEALRRAVREHRRQNWAEIALALP-RRGPKSCRLRWCQHL 60 579***************************.*********9986 PP
2	Myb_DNA-binding	47.2	5.1e-15	68	109	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T+eEd +++ + +G++ W+tIar+++ gR+++ +k+rw++ ONIVA08G18260.1 68 VFTAEEDAIILAQQRVHGNK-WATIARCLP-GRSDNAVKNRWNS 109 59****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence
MAADGGDGSG GGRKTPWTQE EDEALRRAVR EHRRQNWAEI ALALPRRGPK SCRLRWCQHL 60 SPELDSRVFT AEEDAIILAQ QRVHGNKWAT IARCLPGRSD NAVKNRWNSA LRKLLQVQHA 120 RGAGSPPTAA AAAAGDDRDD APVCLQLFPA RAGGVKEAGL FAGEKDVEEE DVATSLTLGL 180 PVLCEAELEL RLGPAWPATA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	8e-37	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G18260.1