PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA08G08420.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 382aa MW: 39979 Da PI: 7.6722

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA08G08420.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.6e-05	185	204	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C C+k+F+r n++ H+ ONIVA08G08420.1 185 FSCAVCNKTFNRFNNMQMHM 204 89*****************9 PP
2	zf-C2H2	13.6	0.0002	276	298	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C Cgk+F + + ++H +++ ONIVA08G08420.1 276 YACRRCGKRFAVRGDWRTHEKNC 298 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MHPHLYQSHH HHQHVAPPTK HGGGEEDDQS MLLLSLWPPG HSSHHHQHHH HGAASSSACS 60 SASISAAAVA AAHSGGGGGG HGAAAAASSW FNPSHYHGGS GGGGGFLFQE QQEPNVSISL 120 SIAPPCGVSG GNAAAMAAAG SFATSPLPQQ PVASSAVATA AGGGQAPSQY WIPSAAEILV 180 GSTQFSCAVC NKTFNRFNNM QMHMWGHGSQ YRKGSESLRG AITVGGAAPP ASLMRLPCYC 240 CAEGCRNNVE HPRARPLKDF RTLQTHYRRK HGARPYACRR CGKRFAVRGD WRTHEKNCGK 300 LWFCVCGSDF KHKRSLKDHV RSFGGGHAPH IVESSSTGAG GGGGCGGAGA DDDDDEYYDD 360 DDDTVSLSRA TSAHDDADMI VV

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MHPHLYQSHH HHQHVAPPTK HGGGEEDDQS MLLLSLWPPG HSSHHHQHHH HGAASSSACS  60
SASISAAAVA AAHSGGGGGG HGAAAAASSW FNPSHYHGGS GGGGGFLFQE QQEPNVSISL  120
SIAPPCGVSG GNAAAMAAAG SFATSPLPQQ PVASSAVATA AGGGQAPSQY WIPSAAEILV  180
GSTQFSCAVC NKTFNRFNNM QMHMWGHGSQ YRKGSESLRG AITVGGAAPP ASLMRLPCYC  240
CAEGCRNNVE HPRARPLKDF RTLQTHYRRK HGARPYACRR CGKRFAVRGD WRTHEKNCGK  300
LWFCVCGSDF KHKRSLKDHV RSFGGGHAPH IVESSSTGAG GGGGCGGAGA DDDDDEYYDD  360
DDDTVSLSRA TSAHDDADMI VV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	9e-96	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA08G08420.1