PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA07G17480.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 671aa MW: 71099.9 Da PI: 6.9733

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA07G17480.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.8	3.7e-08	278	300	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++f+r G C+ Gd+C F+Hg ONIVA07G17480.1 278 VPCPNFRRPGGCPSGDSCEFSHG 300 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence
MGELADLVVV PSQPPLAGGR RDRLAALLEL AAADDVDGLR GALAEGGEEA AELADGVGLW 60 YGRSKAYEAR TPLMVAATYG SAGVVSLLVG LGGCVDVNRR PGADGATALH CAASGGSRNA 120 VAVVKLLLAA GADPATSDSA GRFPADVILA PPASPDALGD LEVLLGRRRA LAVATSVASG 180 SSSPPLSSSP DEGNRSPSSR SSSLSPITVD RGKKEYPVDP TLPDIKSSVY ASDEFRMFAF 240 KVRPCSRAYS HDWTECPFVH PGENARRRDP RKHPYTAVPC PNFRRPGGCP SGDSCEFSHG 300 VFESWLHPSQ YRTRLCKEGA ACARRICFFA HDEDELRHVP HNSGAGLLSP RASSSIDMTA 360 AAALGLLPGS PTRHFAPPPV SPSAGSNGGA AAAHWLQGSR LRSSFNARDA AVDDLGMLLE 420 WESQYLGALC LPPSSRPQPR LSAGLSIRPT IAPSNLEDMY ASDMAMSPRF PNDQGHSVYS 480 PAHKSALLNK LHQQKGLLSP VNTNRMYSPR ALDPSSLAHS PFGGMSPRSP RTMEPTSPLS 540 ARVGAPATQR EMFEQFASLN KHQLPSVGSP RNSTAWGTVG SPMGKVDWGV DSEELVRLRR 600 PAQPGFGEDE TDVSWVQSLV SNAELNGKRG EVQGMPGTSA LMNRPDLNNQ GDLLDQTVIG 660 AWLEQMHLDQ K

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence

MGELADLVVV PSQPPLAGGR RDRLAALLEL AAADDVDGLR GALAEGGEEA AELADGVGLW  60
YGRSKAYEAR TPLMVAATYG SAGVVSLLVG LGGCVDVNRR PGADGATALH CAASGGSRNA  120
VAVVKLLLAA GADPATSDSA GRFPADVILA PPASPDALGD LEVLLGRRRA LAVATSVASG  180
SSSPPLSSSP DEGNRSPSSR SSSLSPITVD RGKKEYPVDP TLPDIKSSVY ASDEFRMFAF  240
KVRPCSRAYS HDWTECPFVH PGENARRRDP RKHPYTAVPC PNFRRPGGCP SGDSCEFSHG  300
VFESWLHPSQ YRTRLCKEGA ACARRICFFA HDEDELRHVP HNSGAGLLSP RASSSIDMTA  360
AAALGLLPGS PTRHFAPPPV SPSAGSNGGA AAAHWLQGSR LRSSFNARDA AVDDLGMLLE  420
WESQYLGALC LPPSSRPQPR LSAGLSIRPT IAPSNLEDMY ASDMAMSPRF PNDQGHSVYS  480
PAHKSALLNK LHQQKGLLSP VNTNRMYSPR ALDPSSLAHS PFGGMSPRSP RTMEPTSPLS  540
ARVGAPATQR EMFEQFASLN KHQLPSVGSP RNSTAWGTVG SPMGKVDWGV DSEELVRLRR  600
PAQPGFGEDE TDVSWVQSLV SNAELNGKRG EVQGMPGTSA LMNRPDLNNQ GDLLDQTVIG  660
AWLEQMHLDQ K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-127	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA07G17480.1