PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA07G13710.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 369aa MW: 37834.5 Da PI: 6.8576

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA07G13710.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	13	56	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 rg W++eEde+lv+++ ++G +W++++++ g+ R++k+c++rw ONIVA07G13710.1 13 RGLWSPEEDEKLVRYISEHGHSCWSSVPKHAGLQRCGKSCRLRW 56 788***************************************** PP
2	Myb_DNA-binding	25.9	2.3e-08	55	77	23	46
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W+ Ia++++ gRt++++k++w++ ONIVA07G13710.1 55 RWAQIAKHLP-GRTDNEVKNFWNS 77 4*******.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MGHHCCSKQK VKRGLWSPEE DEKLVRYISE HGHSCWSSVP KHAGLQRCGK SCRLRWAQIA 60 KHLPGRTDNE VKNFWNSCIK KKLIAQGLDP KTHNLLPASK TLLHGGGGGG AANPSGNGLA 120 QFQSNNGAAA AGTTPFTISS PAKAAAYDVA PPALYDVVLP ANPAGGMLMA HDHHHHHQVA 180 AAAAPVGYPY ADHGGNGGGV LMSFRDQNAG VHGAASMDFM NGSSSSSSME QLGGGGGMSS 240 NGNGSFSASM AAFMDEEAAM WATAVAPPGM GGLAGMDQVA QQQKQQQVLV QDAAVGVAPT 300 TLMMHGGGAA TAGAMVVDKS VEMVDVSSAV YGGATATAFD LDLMVESCGM FCGGSGGAGN 360 AMEQLQWDC

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MGHHCCSKQK VKRGLWSPEE DEKLVRYISE HGHSCWSSVP KHAGLQRCGK SCRLRWAQIA  60
KHLPGRTDNE VKNFWNSCIK KKLIAQGLDP KTHNLLPASK TLLHGGGGGG AANPSGNGLA  120
QFQSNNGAAA AGTTPFTISS PAKAAAYDVA PPALYDVVLP ANPAGGMLMA HDHHHHHQVA  180
AAAAPVGYPY ADHGGNGGGV LMSFRDQNAG VHGAASMDFM NGSSSSSSME QLGGGGGMSS  240
NGNGSFSASM AAFMDEEAAM WATAVAPPGM GGLAGMDQVA QQQKQQQVLV QDAAVGVAPT  300
TLMMHGGGAA TAGAMVVDKS VEMVDVSSAV YGGATATAFD LDLMVESCGM FCGGSGGAGN  360
AMEQLQWDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	7e-54	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA07G13710.1