PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA07G07540.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 354aa MW: 38540.5 Da PI: 9.7657

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA07G07540.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.5	1.3e-12	94	140	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W eEde l + v+ + + W+ Ia+ ++ gR +kqc++rw ++l ONIVA07G07540.1 94 KGGWIREEDEVLRQMVRYHRDRKWAEIAKSLP-GRIGKQCRERWTNHL 140 577999************************.**********996 PP
2	Myb_DNA-binding	55.7	1.1e-17	146	188	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +g WT+eEd +l++a++ +G++ W++Iar ++ gR+++ +k+rw+ ONIVA07G07540.1 146 KGIWTEEEDRKLIRAHQTYGNR-WSAIARSLP-GRSENTVKNRWN 188 678*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MATDRMPDSH FMASSNGGAC YQNTHGTPIT MGVPNLGCLV ASIGIAPSSS LMPERGLATA 60 NYNLVANFPE DAAVVPQQQQ LQAASSNSNS GLIKGGWIRE EDEVLRQMVR YHRDRKWAEI 120 AKSLPGRIGK QCRERWTNHL HPDIKKGIWT EEEDRKLIRA HQTYGNRWSA IARSLPGRSE 180 NTVKNRWNAT KRSLNSKRRL RKKNSEQAVP RQPSLLEEYI RSCQHPLPNE TAPPASFDIG 240 GYGTGGTIGA NPTPPTVHAL GGSTPLGLVM FLDLLNQATP HPPQPDLNLL NITPVYGQLP 300 VQPHGISAQV GPSNVGTSGR TGGMDNNGVI QMASNQFVMP SEGGGIPDMA RWIN

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MATDRMPDSH FMASSNGGAC YQNTHGTPIT MGVPNLGCLV ASIGIAPSSS LMPERGLATA  60
NYNLVANFPE DAAVVPQQQQ LQAASSNSNS GLIKGGWIRE EDEVLRQMVR YHRDRKWAEI  120
AKSLPGRIGK QCRERWTNHL HPDIKKGIWT EEEDRKLIRA HQTYGNRWSA IARSLPGRSE  180
NTVKNRWNAT KRSLNSKRRL RKKNSEQAVP RQPSLLEEYI RSCQHPLPNE TAPPASFDIG  240
GYGTGGTIGA NPTPPTVHAL GGSTPLGLVM FLDLLNQATP HPPQPDLNLL NITPVYGQLP  300
VQPHGISAQV GPSNVGTSGR TGGMDNNGVI QMASNQFVMP SEGGGIPDMA RWIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	6e-42	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA07G07540.1