PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA07G05400.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 676aa MW: 74044.9 Da PI: 6.0271

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA07G05400.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.1	1.8e-14	483	529	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ ONIVA07G05400.1 483 NHVLKERRRREKLNEKFKILRSLVPFM-----TKMDKASILGDTIEYVKQLR 529 79999*******************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MAGGEAQAAL QAVAQSLRWT YSLLWQLCPH QGSSLVWGEG HYNGAVKTRK STVMQPPPAE 60 EEDDADHAAR HRSRQLRELY DWLQQAGENS SGGVQTSSTT ASRRPGAALS PEDLTETEWF 120 FLMSASYSFP PGIGLPGRAF ARRGHVWLTG ANEVDSKVFL RAILAKTVVC IPVVDGVLEI 180 GTTEKVEEDM GLIQYARGIF MDQHGIHMKP TLSQHSTSNP VTHCTHQHPI QVQMQLGITS 240 QTKFDYSDEL NADEENDDTE EEGMSGSDTN NTDTERNSGQ LQLQMQDQLN MVSNDHQTMP 300 NNAVSSELMQ CEMSEVVRDG CSNNILEDEI QMLMDCQNSN CQLNLQGPDE PCHSWHFLCE 360 ELQNDYQPAT EDQVASPENT HYPKTLMTIL HYNTLRQQEM NIKNYLPVSE KSSFSRWTTP 420 EGSDDNKTMI SPGTTQRMLK SILMIVPSSH CSYRGAETPE SRGGKGASGT RKVGAIQGDF 480 SANHVLKERR RREKLNEKFK ILRSLVPFMT KMDKASILGD TIEYVKQLRN RIQELESSSS 540 SSRAAARAPS AAAAGRRRKR SAAAATATAA EGMSSSNGRN GGEAAEVVQV SIIESDALLE 600 LRCGCGGGGG GGGVVLLRVM QAMQELQLEV TAVQASCAGG ELLAELRAKV KGRRRSSIAQ 660 VKRAIHLVLS SSSISP

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MAGGEAQAAL QAVAQSLRWT YSLLWQLCPH QGSSLVWGEG HYNGAVKTRK STVMQPPPAE  60
EEDDADHAAR HRSRQLRELY DWLQQAGENS SGGVQTSSTT ASRRPGAALS PEDLTETEWF  120
FLMSASYSFP PGIGLPGRAF ARRGHVWLTG ANEVDSKVFL RAILAKTVVC IPVVDGVLEI  180
GTTEKVEEDM GLIQYARGIF MDQHGIHMKP TLSQHSTSNP VTHCTHQHPI QVQMQLGITS  240
QTKFDYSDEL NADEENDDTE EEGMSGSDTN NTDTERNSGQ LQLQMQDQLN MVSNDHQTMP  300
NNAVSSELMQ CEMSEVVRDG CSNNILEDEI QMLMDCQNSN CQLNLQGPDE PCHSWHFLCE  360
ELQNDYQPAT EDQVASPENT HYPKTLMTIL HYNTLRQQEM NIKNYLPVSE KSSFSRWTTP  420
EGSDDNKTMI SPGTTQRMLK SILMIVPSSH CSYRGAETPE SRGGKGASGT RKVGAIQGDF  480
SANHVLKERR RREKLNEKFK ILRSLVPFMT KMDKASILGD TIEYVKQLRN RIQELESSSS  540
SSRAAARAPS AAAAGRRRKR SAAAATATAA EGMSSSNGRN GGEAAEVVQV SIIESDALLE  600
LRCGCGGGGG GGGVVLLRVM QAMQELQLEV TAVQASCAGG ELLAELRAKV KGRRRSSIAQ  660
VKRAIHLVLS SSSISP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	488	493	ERRRRE
2	489	494	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	6e-63	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA07G05400.1