PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G24230.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 635aa MW: 70192.2 Da PI: 7.0515

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G24230.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.6	1.4e-18	243	290	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l ++v+ +G g+W+++ r g++R++k+c++rw ++l ONIVA06G24230.2 243 KGPWTPDEDKRLREYVEAHGEGNWNRVQRNAGLNRCGKSCRLRWANHL 290 79******************************************9986 PP
2	Myb_DNA-binding	41.8	2.5e-13	296	339	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+e +++++ lG++ W++ a+ ++ gRt++++k++w++ ONIVA06G24230.2 296 KGPFSKEEEEMIIKLHLWLGNK-WAKMANSLP-GRTDNEIKNFWNT 339 79******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence
MQPDSTDRLA GRHAGCSERA ADLHRTKQMI IFRKFTTKSK KHSMQSCKPR LHRWIVLNPN 60 GKPSPYTLTF QFPSRTPTLA RTPREARCKD LTHTVSIHRM PSRIQFRHPQ TLVGPPRDGS 120 PFRPRTRAIV IGGRLLLASS SLLRLVYYST SLSAAAAAAA AHLVSTPGSS PMEEEEEAAR 180 LAGSQGESPA MLHPNGDGDG DGGDDEGDAS GGEEEQGGVA RAGVRRRGGG GRVRVRGRIP 240 LKKGPWTPDE DKRLREYVEA HGEGNWNRVQ RNAGLNRCGK SCRLRWANHL KPDLKKGPFS 300 KEEEEMIIKL HLWLGNKWAK MANSLPGRTD NEIKNFWNTR CKRIQRTGEP LYPKEFNHFK 360 LTDLEVMNCE SPDESRAKKR TNEVLQGNGQ SYKEVFFDNL DYSRPENYIR PNCVTPNSLP 420 VDATSPFGSA IATQDQSVPF GSAIVSGHPI LDGNFSTSGT IQRPMNVELP SLQYPNYDFN 480 NNNAWSYHDP LGHPIDQVDF GSLRSEYLSP NNNGLLDALV HGGHGQGELA NSQGSFDACF 540 PRVQCNQVIQ SNAFSLSSSF PIIGDDLLEN IYCQFNEELP PSNEQFAKDA DDAFGHGGLS 600 DETNLAAAGQ GDEHDLENPW ASMPGACDIP DFPSE

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence

MQPDSTDRLA GRHAGCSERA ADLHRTKQMI IFRKFTTKSK KHSMQSCKPR LHRWIVLNPN  60
GKPSPYTLTF QFPSRTPTLA RTPREARCKD LTHTVSIHRM PSRIQFRHPQ TLVGPPRDGS  120
PFRPRTRAIV IGGRLLLASS SLLRLVYYST SLSAAAAAAA AHLVSTPGSS PMEEEEEAAR  180
LAGSQGESPA MLHPNGDGDG DGGDDEGDAS GGEEEQGGVA RAGVRRRGGG GRVRVRGRIP  240
LKKGPWTPDE DKRLREYVEA HGEGNWNRVQ RNAGLNRCGK SCRLRWANHL KPDLKKGPFS  300
KEEEEMIIKL HLWLGNKWAK MANSLPGRTD NEIKNFWNTR CKRIQRTGEP LYPKEFNHFK  360
LTDLEVMNCE SPDESRAKKR TNEVLQGNGQ SYKEVFFDNL DYSRPENYIR PNCVTPNSLP  420
VDATSPFGSA IATQDQSVPF GSAIVSGHPI LDGNFSTSGT IQRPMNVELP SLQYPNYDFN  480
NNNAWSYHDP LGHPIDQVDF GSLRSEYLSP NNNGLLDALV HGGHGQGELA NSQGSFDACF  540
PRVQCNQVIQ SNAFSLSSSF PIIGDDLLEN IYCQFNEELP PSNEQFAKDA DDAFGHGGLS  600
DETNLAAAGQ GDEHDLENPW ASMPGACDIP DFPSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	3e-54	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G24230.2