PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G24230.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 644aa MW: 71659.7 Da PI: 6.7057

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G24230.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.6	1.5e-18	211	258	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l ++v+ +G g+W+++ r g++R++k+c++rw ++l ONIVA06G24230.1 211 KGPWTPDEDKRLREYVEAHGEGNWNRVQRNAGLNRCGKSCRLRWANHL 258 79******************************************9986 PP
2	Myb_DNA-binding	41.8	2.5e-13	264	307	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+e +++++ lG++ W++ a+ ++ gRt++++k++w++ ONIVA06G24230.1 264 KGPFSKEEEEMIIKLHLWLGNK-WAKMANSLP-GRTDNEIKNFWNT 307 79******************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence
MQPDSTDRLA GRHAGCSERA ADLHRTKQMI IFRKFTTKSK KHSMQSCKPR LHRWIVLNPN 60 GKPSPYTLTF QFPSRTPTLA RTPREARCKD LTHTVSIHRM PSRIQFRHPS TTLLRSPPPP 120 PPPPPTSSRR RMRMEGSSPM EEEEEAARLA GSQGESPAML HPNGDGDGDG GDDEGDASGG 180 EEEQGGVARA GVRRRGGGGR VRVRGRIPLK KGPWTPDEDK RLREYVEAHG EGNWNRVQRN 240 AGLNRCGKSC RLRWANHLKP DLKKGPFSKE EEEMIIKLHL WLGNKWAKMA NSLPGRTDNE 300 IKNFWNTRCK RIQRTGEPLY PKEFNHFKLT DLEVMNCESP DESRAKKRTN EVLQGNGQSY 360 KEVFFDNLDY SRPENYIRPN CVTPNSLPVD ATSPFGSAIA TQDQSVPFGS AIVSGHPILD 420 GNFSTSGTIQ RPMNVELPSL QYPNYDFNNN NAWSYHDPLG HPIDQVDFGS LRSEYLSPNN 480 NGLLDALVHG GHGQGELANS QGSFDACFPR VQCNQVIQSN AFSLSSSFPI IGDDLLENSC 540 HAFVGINNNA SSLFLDSQPP PLVDPTFWRH DVSLEPNLPV YCQFNEELPP SNEQFAKDAD 600 DAFGHGGLSD ETNLAAAGQG DEHDLENPWA SMPGACDIPD FPSE

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence

MQPDSTDRLA GRHAGCSERA ADLHRTKQMI IFRKFTTKSK KHSMQSCKPR LHRWIVLNPN  60
GKPSPYTLTF QFPSRTPTLA RTPREARCKD LTHTVSIHRM PSRIQFRHPS TTLLRSPPPP  120
PPPPPTSSRR RMRMEGSSPM EEEEEAARLA GSQGESPAML HPNGDGDGDG GDDEGDASGG  180
EEEQGGVARA GVRRRGGGGR VRVRGRIPLK KGPWTPDEDK RLREYVEAHG EGNWNRVQRN  240
AGLNRCGKSC RLRWANHLKP DLKKGPFSKE EEEMIIKLHL WLGNKWAKMA NSLPGRTDNE  300
IKNFWNTRCK RIQRTGEPLY PKEFNHFKLT DLEVMNCESP DESRAKKRTN EVLQGNGQSY  360
KEVFFDNLDY SRPENYIRPN CVTPNSLPVD ATSPFGSAIA TQDQSVPFGS AIVSGHPILD  420
GNFSTSGTIQ RPMNVELPSL QYPNYDFNNN NAWSYHDPLG HPIDQVDFGS LRSEYLSPNN  480
NGLLDALVHG GHGQGELANS QGSFDACFPR VQCNQVIQSN AFSLSSSFPI IGDDLLENSC  540
HAFVGINNNA SSLFLDSQPP PLVDPTFWRH DVSLEPNLPV YCQFNEELPP SNEQFAKDAD  600
DAFGHGGLSD ETNLAAAGQG DEHDLENPWA SMPGACDIPD FPSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	3e-54	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G24230.1