PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA06G20400.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 368aa MW: 39915 Da PI: 7.0918

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G20400.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.1	1.1e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv ++k++G g+W+t ++ g+ R++k+c++rw +yl ONIVA06G20400.1 14 KGPWTPEEDEKLVAYIKEHGQGNWRTLPKNAGLSRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.4	2.9e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ ONIVA06G20400.1 67 RGRFSFEEEEAIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MGRAPCCEKS GLKKGPWTPE EDEKLVAYIK EHGQGNWRTL PKNAGLSRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEEAIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHAPRL DLLDLTSLLK PAAAAAYYPT QADLDTLRAL EPLAGYPDLL RLASAILPAA 180 TTTGAAAAAA AEQAQLLLPW LLQAQMAQQQ QQVTPPPPPP PQAAATEQFL QATSTACHQM 240 PGLVHASPTQ QLAQQPQDHM AAATCHRRGA VQHPSYDNQL DYVPALMQMA SDASNLQQWS 300 STVSSSNNHN VNSGVSTPSS SPAAAGQINS SSTTTTTTYG LNASGDVDDA GLLINMHLSE 360 LLDVSDYM

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MGRAPCCEKS GLKKGPWTPE EDEKLVAYIK EHGQGNWRTL PKNAGLSRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEEAIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHAPRL DLLDLTSLLK PAAAAAYYPT QADLDTLRAL EPLAGYPDLL RLASAILPAA  180
TTTGAAAAAA AEQAQLLLPW LLQAQMAQQQ QQVTPPPPPP PQAAATEQFL QATSTACHQM  240
PGLVHASPTQ QLAQQPQDHM AAATCHRRGA VQHPSYDNQL DYVPALMQMA SDASNLQQWS  300
STVSSSNNHN VNSGVSTPSS SPAAAGQINS SSTTTTTTYG LNASGDVDDA GLLINMHLSE  360
LLDVSDYM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-86	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G20400.1