PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA06G12400.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

CO-like

Protein Properties

Length: 408aa MW: 44281.8 Da PI: 4.7446

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G12400.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.6	1.9e-06	33	75	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+ + + +C+ + +lC++C H H++v ONIVA06G12400.1 33 RPCDGCRAAPSVVYCRADAAYLCASCDARVHAAnrvasrHERV 75 68**************************999556677778766 PP
2	zf-B_box	27.1	8.5e-09	75	120	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 r+C+ +e+ ++ l C+ + lC C ++ H+ H++vp+ ONIVA06G12400.1 75 VRVCEACERAPAALACRADAAALCVACDVQVHSAnplarrHQRVPV 120 689****************************6689999999986 PP
3	CCT	66.2	9.2e-23	341	384	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k RkFeK+irYe+RKa+Ae RpR+KGrF+k++ ONIVA06G12400.1 341 REARVLRYREKKKARKFEKTIRYETRKAYAEARPRIKGRFAKRS 384 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MNYNFGGNVF DQEVGVGGEG GGGGEGSGCP LARPCDGCRA APSVVYCRAD AAYLCASCDA 60 RVHAANRVAS RHERVRVCEA CERAPAALAC RADAAALCVA CDVQVHSANP LARRHQRVPV 120 APLPAITIPA TSVLAEAVVA TATVLGDKDE EVDSWLLLSK DSNNNNNNNN NNNDNDNDNN 180 DNNNSNSSNN GMYFGEVDEY FDLVGYNSYY DNRIENNQDQ QYGMHEQQEQ QQQQQEMQKV 240 FAEKEGSECV VPSQITMLSE QQHSGYGVVG ADQAASMTAG VSAYTDSISN SISFSSMEAG 300 IVPDSTVIDM PNSSILTLAG AINLFSGPSL QMSLHFSSMD REARVLRYRE KKKARKFEKT 360 IRYETRKAYA EARPRIKGRF AKRSDVQIEV DQMFSTAALS DGSYGTVP

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MNYNFGGNVF DQEVGVGGEG GGGGEGSGCP LARPCDGCRA APSVVYCRAD AAYLCASCDA  60
RVHAANRVAS RHERVRVCEA CERAPAALAC RADAAALCVA CDVQVHSANP LARRHQRVPV  120
APLPAITIPA TSVLAEAVVA TATVLGDKDE EVDSWLLLSK DSNNNNNNNN NNNDNDNDNN  180
DNNNSNSSNN GMYFGEVDEY FDLVGYNSYY DNRIENNQDQ QYGMHEQQEQ QQQQQEMQKV  240
FAEKEGSECV VPSQITMLSE QQHSGYGVVG ADQAASMTAG VSAYTDSISN SISFSSMEAG  300
IVPDSTVIDM PNSSILTLAG AINLFSGPSL QMSLHFSSMD REARVLRYRE KKKARKFEKT  360
IRYETRKAYA EARPRIKGRF AKRSDVQIEV DQMFSTAALS DGSYGTVP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	7e-69	CO-like family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G12400.1