PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA06G11650.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

CO-like

Protein Properties

Length: 453aa MW: 48440 Da PI: 4.8326

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G11650.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.4	6e-08	18	59	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + + +++++C ++ +lC+ C ++ H+ H+ ONIVA06G11650.1 18 ARACDGCLRRRARWYCAADDAFLCQGCDTSVHSAnplarrHE 59 678*****************************6567777776 PP
2	CCT	67.3	4.2e-23	396	439	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a ONIVA06G11650.1 396 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 439 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MSSTAKAAAA GAVGAKSARA CDGCLRRRAR WYCAADDAFL CQGCDTSVHS ANPLARRHER 60 LRLRPSSPPP LVPPSGSGRR DEAVPAAWFK RKARTPRSHA AKSAAAVGQL LSRRLVVVPE 120 AAAGSGGDSP EERKDEGEIV EEQEQLLYRV PIFDPALSEF CSPPPLEDAA AAVSCCNEDG 180 AVENPTKPSM TTTTATTPPL QFFPDGQANF GPTDAELREF AADMEALLGR GLDDGNDEDS 240 FCMETLGLIE PVDDDAGRVK VEADGDAGMT LAWCHELDTE TSSGEMLDID FDCGSPQAAT 300 TPDEKVGSSG PAAAAAAADD DDAQLQQSNL ALSLNYEAII ESWGTSPWTD GERPHVKLDD 360 SWPRDYSGVW MAAAGVFGHG GEEQALTPRL GMDGGREARV SRYREKRRTR LFSKKIRYEV 420 RKLNAEKRPR MKGRFVKRAA AAATAAVATA CVA

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MSSTAKAAAA GAVGAKSARA CDGCLRRRAR WYCAADDAFL CQGCDTSVHS ANPLARRHER  60
LRLRPSSPPP LVPPSGSGRR DEAVPAAWFK RKARTPRSHA AKSAAAVGQL LSRRLVVVPE  120
AAAGSGGDSP EERKDEGEIV EEQEQLLYRV PIFDPALSEF CSPPPLEDAA AAVSCCNEDG  180
AVENPTKPSM TTTTATTPPL QFFPDGQANF GPTDAELREF AADMEALLGR GLDDGNDEDS  240
FCMETLGLIE PVDDDAGRVK VEADGDAGMT LAWCHELDTE TSSGEMLDID FDCGSPQAAT  300
TPDEKVGSSG PAAAAAAADD DDAQLQQSNL ALSLNYEAII ESWGTSPWTD GERPHVKLDD  360
SWPRDYSGVW MAAAGVFGHG GEEQALTPRL GMDGGREARV SRYREKRRTR LFSKKIRYEV  420
RKLNAEKRPR MKGRFVKRAA AAATAAVATA CVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	407	423	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-59	CO-like family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G11650.1