PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G11490.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 536aa    MW: 60496.6 Da    PI: 11.7741
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G11490.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.7e-143984348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +WT+eEd  l ++  + G+++W+++a+ m+ +R++ qc++rw+++l
  ONIVA06G11490.1 39 AWTPEEDAALERLAVENGSRHWRRVAAQMPRKRSPVQCRDRWRDHL 84
                     6*****************************99***********986 PP
2Myb_DNA-binding43.57.3e-14431479348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT+e+d  l ++  ++G+++W+++a+ m+    +R++ qc++rw+++l
  ONIVA06G11490.1 431 AWTPELDAVLERLAMEHGSRHWRRVAAQMPrhsSRRSPAQCRDRWRDHL 479
                      7*********************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    
MAMMEPSSSS SSTASAVTPS SAPPSGRCCV VLRIKLPAAW TPEEDAALER LAVENGSRHW  60
RRVAAQMPRK RSPVQCRDRW RDHLARDVFH RPYTAADDDE LTRLVLRPGG GGDRWNDISR  120
AVHGRSSRSV KRRWMEIGTS DELLRKLWHP RSSMLSPATV VDAFPLSLSH PISHYSHFFY  180
RPEQALAAAV PANSSAPSAG NHPPQMRVVR EHMLPPTSLI SGHQSPSAPP PSPLYLFGKN  240
RNRRGRNEGR RRKRKRKRKA DRWAHEHLNL YLLFEYFRLF PKYPLATKKP PVGTLRLPWG  300
HSRFTIPDVG PPAKPKPKVE VLLLAPHASM RIVVGASLFP RPPQHAAQLV FGLCVILAAL  360
PPLTVVGSLF YFGWQPVVFQ GSDNQVAYLG FIRVGARQLS SSSSAASVFA SSSATSPPLG  420
RCVVRIRLPP AWTPELDAVL ERLAMEHGSR HWRRVAAQMP RHSSRRSPAQ CRDRWRDHLA  480
RDVFHRPFTA DDDAELARLC LRLDDGRSSR AVKRRWRELR KSDAFLGKLW RRPLSH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250256RRRKRKR
2250258RRRKRKRKR
3251256RRKRKR
4251257RRKRKRK
5251257RRRKRKR
6251259RRRKRKRKR
7252257RKRKRK
8252258RRRKRKR
9253259RRRKRKR
10254259RKRKRK
11510515RAVKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.11e-15MYB family protein