PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G09080.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 360aa    MW: 40102.9 Da    PI: 4.4096
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G09080.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.61.2e-26958150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien  nrqvtfskRrng++KKA+ELSvLCd+++a+++fs++g+l  +s
  ONIVA06G09080.1  9 KRIENIQNRQVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSGRLSHFS 58
                     79********************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    
MGRVKLQIKR IENIQNRQVT FSKRRNGLIK KAYELSVLCD IDIALLMFSP SGRLSHFSGR  60
RRIEDVLTRY INLPESDRGG TIQNREYLIN MLTQLKCESD VTEDLTNTSS KAPVNSNIEE  120
LQQEIRRCQH QMQLTEEQLR MFEPDPARSA SMEDVEASEK FIAGILSRVE ERKRHLLCSM  180
GSFDVTASTS AMQHLYLPQQ HQHGDITDNG FGSDEVASWV SEGMPPTTSS VASIFAGTSD  240
SMMSFRDQAV YDTMRQDACV DQTVVPEMGM CHVDQQNQSD DWQAYTSAEF LNALIPPTPF  300
PLDDEDTMGP MLASSPLLMP GIHDQQPPEE DMATAGCSQA PANDGNGLYA AEDIAPVNVG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.11e-74MIKC_MADS family protein