PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA06G06960.3

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 477aa MW: 50628.6 Da PI: 4.9153

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G06960.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	1e-11	326	371	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L++l+P++ K +Ka++L + ++Y+k Lq ONIVA06G06960.3 326 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 371 99*********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence
MDYSAGSYMW PGNSGSENYN FVDGSSESYA EEGSLPPSGY FMGAGSDRSL KITENERNPT 60 MLANGCLPYN TQAHPLSGQI LPKGELPNNL LDLQQLQNSS NLRSNSIPPG VLQCNSSGTF 120 DAKLDTPGLA ELPHALSSSI DSNGSDISAF LADVHAVSSA PTLCSAFQNV SSFMEPVNLD 180 AFGFQGAQNV AMLNKTSLPN GNPSLFDNAA IASLHDSKEF LNGGSIPSFG TVLQALGAGG 240 LKAAQQEQNI RNIPLPTFTS GSHLAVTDAQ GPPLPSKIPP LIHDHNSEYP INHSSDVEPQ 300 ANSAPGNSAN AKPRTRARRG QATDPHSIAE RLRREKISER MKNLQDLVPN SNKADKASML 360 DEIIDYVKFL QLQVKVLSMS RLGAPGAVLP LLRESQTECH SNPSLSASTI SQGPPDMPDS 420 EDSSAFEQEV VKLMETSITS AMQYLQNKGL CLMPIALASA ISNQKGMAAA AAIPPEK

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence

MDYSAGSYMW PGNSGSENYN FVDGSSESYA EEGSLPPSGY FMGAGSDRSL KITENERNPT  60
MLANGCLPYN TQAHPLSGQI LPKGELPNNL LDLQQLQNSS NLRSNSIPPG VLQCNSSGTF  120
DAKLDTPGLA ELPHALSSSI DSNGSDISAF LADVHAVSSA PTLCSAFQNV SSFMEPVNLD  180
AFGFQGAQNV AMLNKTSLPN GNPSLFDNAA IASLHDSKEF LNGGSIPSFG TVLQALGAGG  240
LKAAQQEQNI RNIPLPTFTS GSHLAVTDAQ GPPLPSKIPP LIHDHNSEYP INHSSDVEPQ  300
ANSAPGNSAN AKPRTRARRG QATDPHSIAE RLRREKISER MKNLQDLVPN SNKADKASML  360
DEIIDYVKFL QLQVKVLSMS RLGAPGAVLP LLRESQTECH SNPSLSASTI SQGPPDMPDS  420
EDSSAFEQEV VKLMETSITS AMQYLQNKGL CLMPIALASA ISNQKGMAAA AAIPPEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	6e-57	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G06960.3