PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA06G00830.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 392aa MW: 41900.3 Da PI: 5.6098

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA06G00830.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.6e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llv+++ + G g+W++ ++ g++R++k+c++rw +yl ONIVA06G00830.1 15 KGPWTPEEDKLLVEYIGKNGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	48.1	2.6e-15	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ +E+ l++++++ lG++ W++Ia ++ gRt++++k++w+++l ONIVA06G00830.1 68 RGGFSDDEERLIIHLHATLGNK-WSSIATKLK-GRTDNEIKNYWNTHL 113 7889****************.****9.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MGRSPCCEQD ADVKKGPWTP EEDKLLVEYI GKNGHGSWRR LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGG FSDDEERLII HLHATLGNKW SSIATKLKGR TDNEIKNYWN THLRKKLLSQ 120 GIDPVTHRPR TDLLAGLPNL LAAANLGGAA HQLPLDLNAI KLQADAAKFQ ILQGLLRVLA 180 STTAPPPTAA VLPGTDLMTS ILGATLAANS ASILGQQQQL AGVDLSRLGQ YNGNYDNLPP 240 LTNDSCTQQT QPAMSSMSPD SLLNRISSGI SGDMLGSPEL CHGGDGLSSP ELGQGGPSAS 300 NMTTSPMAPP PPMVAADDHQ CNTNTPSGGG DGMSCEQTPA SSTFDGLNLD DIDMEGCWAM 360 TDILLAEQCP SWLISSNNAS EMYISKNNTS EM

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MGRSPCCEQD ADVKKGPWTP EEDKLLVEYI GKNGHGSWRR LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGG FSDDEERLII HLHATLGNKW SSIATKLKGR TDNEIKNYWN THLRKKLLSQ  120
GIDPVTHRPR TDLLAGLPNL LAAANLGGAA HQLPLDLNAI KLQADAAKFQ ILQGLLRVLA  180
STTAPPPTAA VLPGTDLMTS ILGATLAANS ASILGQQQQL AGVDLSRLGQ YNGNYDNLPP  240
LTNDSCTQQT QPAMSSMSPD SLLNRISSGI SGDMLGSPEL CHGGDGLSSP ELGQGGPSAS  300
NMTTSPMAPP PPMVAADDHQ CNTNTPSGGG DGMSCEQTPA SSTFDGLNLD DIDMEGCWAM  360
TDILLAEQCP SWLISSNNAS EMYISKNNTS EM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	3e-74	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA06G00830.1