PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G00320.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 481aa    MW: 51216.2 Da    PI: 5.8324
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G00320.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2148e-661274801374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlsel....aspdgd...pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                      lv+ Ll++A+ +++gd + a+++Larl+++     sp g    p+ R+aa +  AL    a          p+s+t + ++  +laa+k++ ++
  ONIVA06G00320.1 127 LVDDLLDAARLLDAGDSTSAREILARLNHRlpslPSPPGHahpPLLRAAALLRDALLPPTAL---------PVSST-PLDVPLKLAAHKALADA 210
                      5789*************************976666676655668899999999998665554.........44333.4669999********** PP

             GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa...sRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                      sP+++f+ +t  qa l+a+ +++r+H +Dfd++ G++Wp+L+q+La     +  ++pp+l++T+++sp s++  el+ t+e L++fA+elg+pf
  ONIVA06G00320.1 211 SPTVQFTTFTSTQAFLDALGSARRLHLLDFDVGFGAHWPPLMQELAhhwR-RaaGPPPNLKVTALVSPGSSHPLELHLTNESLTRFAAELGIPF 303
                      **********************************************5533.3578889************************************ PP

             GRAS 177 efnvlvakrledlel.eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                      ef++lv + l++ ++   L+  p+Ea+aV+l     ++         + ++ L++vk+l+P vvv+v++ +++++       l+ l+ ++al++
  ONIVA06G00320.1 304 EFTALVFDPLSSASPpLGLSAAPDEAVAVHLTAGSGTFS--------PAPAHLRVVKELRPAVVVCVDHGCERGA-------LNLLRSCAALLE 382
                      ********999986515799999**********999997........56789********************966.......5667899***** PP

             GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                      sl+a  ++  +  +kvE+++l+++++ +    g++           +++l +aGF ++++s+ a++qa++llr+++s+g++ve+++++l l W+
  ONIVA06G00320.1 383 SLDAA-GASPDVVSKVEQFVLRPRVERLAVGGGDK------LPPPLQSMLASAGFAALQVSNAAEAQAECLLRRTASHGFHVEKRQAALALWWQ 469
                      **988.5666999*************998888887......678889*********************************************** PP

             GRAS 364 drpLvsvSaWr 374
                      + +LvsvSaWr
  ONIVA06G00320.1 470 RSELVSVSAWR 480
                      **********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    
MSSSSCHPHN PTTLPLPEPD SSKSPEPTSV LYNRSSPSTS LGSFSSKPPE DPPPPPIAAD  60
DDCDWDAVVD MHMHMLAPAP APDSSFLRWI MDTGYADADT FPDHPSFDSD LLQLPMPMPS  120
DHPPQPLVDD LLDAARLLDA GDSTSAREIL ARLNHRLPSL PSPPGHAHPP LLRAAALLRD  180
ALLPPTALPV SSTPLDVPLK LAAHKALADA SPTVQFTTFT STQAFLDALG SARRLHLLDF  240
DVGFGAHWPP LMQELAHHWR RAAGPPPNLK VTALVSPGSS HPLELHLTNE SLTRFAAELG  300
IPFEFTALVF DPLSSASPPL GLSAAPDEAV AVHLTAGSGT FSPAPAHLRV VKELRPAVVV  360
CVDHGCERGA LNLLRSCAAL LESLDAAGAS PDVVSKVEQF VLRPRVERLA VGGGDKLPPP  420
LQSMLASAGF AALQVSNAAE AQAECLLRRT ASHGFHVEKR QAALALWWQR SELVSVSAWR  480
C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.17e-64GRAS family protein