PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA05G29540.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 421aa MW: 44805.2 Da PI: 4.7312

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G29540.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.8	4.1e-13	185	236	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e+I++L+ ONIVA05G29540.1 185 QRMTHIAVERNRRRQMNEYLRVLRSLMPGS---YVQRGDQASIIGGAIEFIRELE 236 79**************************...9****************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MDKEVQQRSH LERFAALDEA PPPAPEETVV TGGEMVDYML GQPPPTTPGP QSQVSFDKLT 60 FSDVLQFADF GPKLALNQPA ASDNGGGGGD DGDDDDDSYF LRFQSLPSLP AVPPPRGGAG 120 AAHQVVDEQE GSKQTVDAGG VSESTTLVQQ ADGGGGRAEK AGEQGKSGRR KRPRTVKTSE 180 EVESQRMTHI AVERNRRRQM NEYLRVLRSL MPGSYVQRGD QASIIGGAIE FIRELEQLIQ 240 CLESQKRRRL YGGDAPAPPA RPVADGAVLP APMQQPPPAT PPFFPPSIPF PASSGAGDGT 300 GAGVAKVALD LDASGGGEVG GGVREEMAEN KSCVADIEVR VVGVDAMIKI LSRRRPGQLI 360 KTVAALEEMH MSILHTNITT IDQTVLYSFN VKIAGDARFS AEDIAGAVHQ ILSFIDVNYT 420 L

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MDKEVQQRSH LERFAALDEA PPPAPEETVV TGGEMVDYML GQPPPTTPGP QSQVSFDKLT  60
FSDVLQFADF GPKLALNQPA ASDNGGGGGD DGDDDDDSYF LRFQSLPSLP AVPPPRGGAG  120
AAHQVVDEQE GSKQTVDAGG VSESTTLVQQ ADGGGGRAEK AGEQGKSGRR KRPRTVKTSE  180
EVESQRMTHI AVERNRRRQM NEYLRVLRSL MPGSYVQRGD QASIIGGAIE FIRELEQLIQ  240
CLESQKRRRL YGGDAPAPPA RPVADGAVLP APMQQPPPAT PPFFPPSIPF PASSGAGDGT  300
GAGVAKVALD LDASGGGEVG GGVREEMAEN KSCVADIEVR VVGVDAMIKI LSRRRPGQLI  360
KTVAALEEMH MSILHTNITT IDQTVLYSFN VKIAGDARFS AEDIAGAVHQ ILSFIDVNYT  420
L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	197	RMTHIAVERNRR
2	246	250	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-55	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA05G29540.1