PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA05G25380.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 415aa MW: 42390 Da PI: 6.6305

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA05G25380.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18	5.3e-06	311	351	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P K++ a++L +A Y+k L ONIVA05G25380.1 311 ARLRRERVSERLRVLQRLVPGG-----SKMDTATMLDEAASYLKFL 351 599***************95.....5**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MDAFGWSAPA APCQPSCGPG GDDDDDVLLA AVLGASFELH SLVDGGGNGA AGAVRSDDAY 60 GLDVDLPSHQ MSLLRCQDGL SALHGDASPT AAAAAFLDSV DVLPVPAIAG ATHDDGGLLD 120 RFAFPNVAET TTVQAAASNT AFSGYSSNTT GGGNISSGES NTYTEVASTP CAVSTTTTTT 180 TALPPSKRKL PEKYPVVGTS STTKTTTTSE TAAERRSTKR AAGVSSSITF GGGRHGAGAA 240 AALLGLGRGY EPDTEAIAQV KEMIYRAAAM RPVTLGGAAS ASDPSSAAPP PPQRPRRKNV 300 RISSDPQTVA ARLRRERVSE RLRVLQRLVP GGSKMDTATM LDEAASYLKF LKSQLEALET 360 LGNGNGNGNL LHHGYYTGSR NATATAATGS SNSTVLAFGR DGLAGFVKSN RNLQL

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MDAFGWSAPA APCQPSCGPG GDDDDDVLLA AVLGASFELH SLVDGGGNGA AGAVRSDDAY  60
GLDVDLPSHQ MSLLRCQDGL SALHGDASPT AAAAAFLDSV DVLPVPAIAG ATHDDGGLLD  120
RFAFPNVAET TTVQAAASNT AFSGYSSNTT GGGNISSGES NTYTEVASTP CAVSTTTTTT  180
TALPPSKRKL PEKYPVVGTS STTKTTTTSE TAAERRSTKR AAGVSSSITF GGGRHGAGAA  240
AALLGLGRGY EPDTEAIAQV KEMIYRAAAM RPVTLGGAAS ASDPSSAAPP PPQRPRRKNV  300
RISSDPQTVA ARLRRERVSE RLRVLQRLVP GGSKMDTATM LDEAASYLKF LKSQLEALET  360
LGNGNGNGNL LHHGYYTGSR NATATAATGS SNSTVLAFGR DGLAGFVKSN RNLQL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	294	298	RPRRK
2	312	317	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	7e-27	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA05G25380.1