PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA04G28760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 397aa MW: 42044.2 Da PI: 6.9253 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l + ++++G g+W+++++ g+ R++k+c++rw +yl ONIVA04G28760.1 14 RGLWSPEEDEKLMNHIAKYGHGCWSSVPKLAGLERCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.7 | 7.4e-15 | 67 | 144 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT................................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg................................tWktIartmgkgRtlkqcksrwqky 47 rg +++eE++l+++++ +lG++ +W+ Ia+ ++ gRt++++k++w++y ONIVA04G28760.1 67 RGTFSQEEEDLIIQLHSMLGNKyvlysssthicqslsrsvpsltmaaatatalaRWSQIAAQLP-GRTDNEVKNFWNSY 144 899*************************************************************.************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 397 aa Download sequence |
MAKQSCCHKK KLRRGLWSPE EDEKLMNHIA KYGHGCWSSV PKLAGLERCG KSCRLRWINY 60 LRPDLKRGTF SQEEEDLIIQ LHSMLGNKYV LYSSSTHICQ SLSRSVPSLT MAAATATALA 120 RWSQIAAQLP GRTDNEVKNF WNSYIKKKLR DRGIDPATHK PLAADSSATP TNTTAAAASR 180 STATCRAVFS DAELQIPTAA AVQQQQQAPL VGAMQLVDGI KMPLDDYWPA AAAAAAPSSS 240 TTTFSAYHHA LSMQQQAAAG CGGAAAFDMD ALSHCGVVVA PSASSSSTLT SMAGLSPAAA 300 DAAEQSANVA AAAATTTNLP WLDLGHANPI ATMDHYAGVL DELRWSDYFD GAYQAATTAT 360 QGGALQGQCL YDGGGGGGKD VDDAVQFVDV HSLSNWC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G57560.1 | 3e-69 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | ONIVA04G28760.1 |