PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA04G23220.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

GRF

Protein Properties

Length: 385aa MW: 41334.1 Da PI: 7.1

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G23220.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.2	7.9e-25	116	160	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ ONIVA04G23220.1 116 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEA 160 79****************************************996 PP
2	QLQ	59	1.4e-20	55	90	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTaaQ ++L++Q+l+yKyL+a++PvP++Ll++i++ ONIVA04G23220.1 55 PFTAAQYEELEQQALIYKYLVAGVPVPADLLLPIRR 90 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MAMPFASLSP AADHRPSIFP FCRSSPLSAV GEEAQQHMMG ARWAAAAAAV ARPPPFTAAQ 60 YEELEQQALI YKYLVAGVPV PADLLLPIRR GLDSLASRFY HHPVLGYGSY FGKKLDPEPG 120 RCRRTDGKKW RCSKEAAPDS KYCERHMHRG RNRSRKPVEA QLVAPHSQPP ATAPAAAVTS 180 TAFQNHSLYP AIANGGGANG GGGGGGGGGS APGSFALGSN TQLHMDNAAS YSTVAGAGNK 240 DFRYSAYGVR PLADEHSPLI TGAMDTSIDN SWRLLPSQTS TFSVSSYPML GNLSELDQNT 300 ICSLPKVERE PLSFFGSDYV TVDSGKQENQ TLRPFFDEWP KARDSWPDLA DDNSLATFSA 360 TQLSISIPMA TSDFSTTSSR SHNDE

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MAMPFASLSP AADHRPSIFP FCRSSPLSAV GEEAQQHMMG ARWAAAAAAV ARPPPFTAAQ  60
YEELEQQALI YKYLVAGVPV PADLLLPIRR GLDSLASRFY HHPVLGYGSY FGKKLDPEPG  120
RCRRTDGKKW RCSKEAAPDS KYCERHMHRG RNRSRKPVEA QLVAPHSQPP ATAPAAAVTS  180
TAFQNHSLYP AIANGGGANG GGGGGGGGGS APGSFALGSN TQLHMDNAAS YSTVAGAGNK  240
DFRYSAYGVR PLADEHSPLI TGAMDTSIDN SWRLLPSQTS TFSVSSYPML GNLSELDQNT  300
ICSLPKVERE PLSFFGSDYV TVDSGKQENQ TLRPFFDEWP KARDSWPDLA DDNSLATFSA  360
TQLSISIPMA TSDFSTTSSR SHNDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-45	GRF family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G23220.1