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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | ONIVA04G19830.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family | MYB | ||||||||
| Protein Properties | Length: 340aa MW: 36860.6 Da PI: 6.8431 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 46.5 | 8.5e-15 | 15 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd lv+ +k+ Gg+ +W+ +r g++R++k+c++rw +yl
ONIVA04G19830.1 15 KGPWTEEEDRALVEHIKKQGGHvgSWRGLPRAAGLNRCGKSCRLRWTNYL 64
79**********************************************97 PP
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| 2 | Myb_DNA-binding | 50.7 | 4.2e-16 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg+++ +E+ l++++++ lG++ W+tIa ++ gRt++++k++w+++
ONIVA04G19830.1 70 RGNFSVDEERLIIRLHAALGNK-WSTIATHLD-GRTDNEIKNYWNTH 114
89********************.*********.************97 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 340 aa Download sequence |
MGRSPCCCHD AGVKKGPWTE EEDRALVEHI KKQGGHVGSW RGLPRAAGLN RCGKSCRLRW 60 TNYLRPDIRR GNFSVDEERL IIRLHAALGN KWSTIATHLD GRTDNEIKNY WNTHIKKKLL 120 RMGIDPVTHQ RLPPDLLADG GGLGAASPLL SPPGPAAAAA LQPLLSAVAS LGSLDTALRQ 180 FQLLQHLLNS ITSSSSDVAA TAGLMATNLA ATNTMVNSSS NVASFQEQMN ALAHANYQPG 240 YLRDVVPSFP GQDMAPQLNS TSSTPSTAPV LRSSAEPADQ CCNDAALVPE TYPREVAASV 300 DHWKVQDFPS LEPLELPNLS TLESDLDPFW KEILESSFRS |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G02940.1 | 9e-70 | MYB family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | ONIVA04G19830.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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