PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G19340.2

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 964aa MW: 106575 Da PI: 8.5053

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G19340.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.7	5.6e-08	290	382	1	47
TSSS-HHHHHHHHHHHHHTTTT..............................................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..............................................tWktIartmgkgRtlkqcksrwqky 47 +++W+ E e+l++++kq + +W++Ia++ gR++ +c srw+++ ONIVA04G19340.2 290 KQPWSDVEKEKLAKGIKQQYQEalilnsinkgsstgdfsavdmayaltntagnfevtpeslrsvlpliNWDKIAAMYLPGRSGAECESRWLNF 382 79**************99999***********************************************99888**********97 PP
2	Myb_DNA-binding	29.4	1.8e-09	390	434	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++WT+ E+++l+ v+q G+++W Ia t+g++Rt+ qc r+q ONIVA04G19340.2 390 NAWTAREEKRLILTVQQQGMNNWINIAVTLGTHRTPFQCLVRYQR 434 68**************************************99995 PP
3	Myb_DNA-binding	43.4	7.9e-14	444	487	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W +eEd++l av+ +G++ W ++++ m gRt++qc +rw+k l ONIVA04G19340.2 444 DWAEEEDLQLQAAVNTFGTN-WQLVSASMD-GRTGNQCSNRWRKTL 487 6***************99.*****.**********975 PP
4	Myb_DNA-binding	48.6	1.9e-15	495	540	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 grW+ +Ed++l avk++G+ +W++Ia+ ++ gRt qc +rw+++l ONIVA04G19340.2 495 GRWSLDEDKRLMVAVKLFGSSSWNKIAQFIP-GRTQSQCNERWRNVL 540 8****************************.**********986 PP
5	Myb_DNA-binding	31.4	4.3e-10	547	591	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHH.HHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIa.rtmgkgRtlkqcksrwqky 47 g W +eEd +l+ v ++G+ W++Ia ++++ +Rt+++c rw+k+ ONIVA04G19340.2 547 GEWRPEEDSILLASVDEFGPC-WSKIAgAKIP-HRTDNMCLRRWRKL 591 68***************88.945777.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 964 aa Download sequence
MDFYSDDSDP DIDEDLQRDL DALRQSCILS GNDPDAAVAQ VSACLAAPPA AAAGAEVNGL 60 SDDDDEEEDE DLALVRSIRE NLLLNKASPS SPLPRPICAW PPSDSEDDED DLETLRAIQR 120 RFSHYHSGTS SGSEMNTKTE ASKEGSGNFF GNELDEEFDA EKHNKEATTR TGFPKAALLL 180 VDALKKNRAC QKFIRRKMIT IEAKIEENKD LRDRVKCLLD YQLSCRKAFG KILCQKEDPR 240 VRLISSRKPC AQSTKNKDKK TPALFLGPAD NPHVSKYKMV LKQLPMSLQK QPWSDVEKEK 300 LAKGIKQQYQ EALILNSINK GSSTGDFSAV DMAYALTNTA GNFEVTPESL RSVLPLINWD 360 KIAAMYLPGR SGAECESRWL NFDDPLINHN AWTAREEKRL ILTVQQQGMN NWINIAVTLG 420 THRTPFQCLV RYQRSLNHCI LNKDWAEEED LQLQAAVNTF GTNWQLVSAS MDGRTGNQCS 480 NRWRKTLNPE RSRVGRWSLD EDKRLMVAVK LFGSSSWNKI AQFIPGRTQS QCNERWRNVL 540 DPDIDLGEWR PEEDSILLAS VDEFGPCWSK IAGAKIPHRT DNMCLRRWRK LCQDKLPSVK 600 AAQQIKKSIL QCNFVDRETE RPAIGPSDLM PLVRSKVDGS DENTVRKPRK RSRIPCEDNV 660 LPGDTSNSSP SMNLPLSESI DAEAAVNTTT ANSKKKPSRS RSKKQTDENL AVCDVNNSSN 720 CSSGARKRKR SITDKNQVVQ KKMKGSISGD NEAVVETVGT ISADNEVATK RKTGSTSVGE 780 EGTTKKTTRG SLSGKGEVNK RMRGSISGVQ KGATKQRMRG SVSTDNHGAV MKSKRAPSRK 840 SAEENSKADS MANAAFGSDL PTVASEDRDA DNGNVKNGRL KSMPRPKQIN MTEGSADKFS 900 TSTRLADCMS FGRINGSSRV ARHLCVSVKP LSNMIQSNGP SDVSAKDPTS AETDPTSVEN 960 SNTA

Sequence ? help Back to Top

Protein Sequence Length: 964 aa Download sequence

MDFYSDDSDP DIDEDLQRDL DALRQSCILS GNDPDAAVAQ VSACLAAPPA AAAGAEVNGL  60
SDDDDEEEDE DLALVRSIRE NLLLNKASPS SPLPRPICAW PPSDSEDDED DLETLRAIQR  120
RFSHYHSGTS SGSEMNTKTE ASKEGSGNFF GNELDEEFDA EKHNKEATTR TGFPKAALLL  180
VDALKKNRAC QKFIRRKMIT IEAKIEENKD LRDRVKCLLD YQLSCRKAFG KILCQKEDPR  240
VRLISSRKPC AQSTKNKDKK TPALFLGPAD NPHVSKYKMV LKQLPMSLQK QPWSDVEKEK  300
LAKGIKQQYQ EALILNSINK GSSTGDFSAV DMAYALTNTA GNFEVTPESL RSVLPLINWD  360
KIAAMYLPGR SGAECESRWL NFDDPLINHN AWTAREEKRL ILTVQQQGMN NWINIAVTLG  420
THRTPFQCLV RYQRSLNHCI LNKDWAEEED LQLQAAVNTF GTNWQLVSAS MDGRTGNQCS  480
NRWRKTLNPE RSRVGRWSLD EDKRLMVAVK LFGSSSWNKI AQFIPGRTQS QCNERWRNVL  540
DPDIDLGEWR PEEDSILLAS VDEFGPCWSK IAGAKIPHRT DNMCLRRWRK LCQDKLPSVK  600
AAQQIKKSIL QCNFVDRETE RPAIGPSDLM PLVRSKVDGS DENTVRKPRK RSRIPCEDNV  660
LPGDTSNSSP SMNLPLSESI DAEAAVNTTT ANSKKKPSRS RSKKQTDENL AVCDVNNSSN  720
CSSGARKRKR SITDKNQVVQ KKMKGSISGD NEAVVETVGT ISADNEVATK RKTGSTSVGE  780
EGTTKKTTRG SLSGKGEVNK RMRGSISGVQ KGATKQRMRG SVSTDNHGAV MKSKRAPSRK  840
SAEENSKADS MANAAFGSDL PTVASEDRDA DNGNVKNGRL KSMPRPKQIN MTEGSADKFS  900
TSTRLADCMS FGRINGSSRV ARHLCVSVKP LSNMIQSNGP SDVSAKDPTS AETDPTSVEN  960
SNTA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	1e-148	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G19340.2