PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA04G19250.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 570aa MW: 59674.9 Da PI: 5.4434

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G19250.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.1e-05	124	141	2	19
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk F++++++ H ONIVA04G19250.1 124 VCKNCGKEFTSWEHFLEH 141 7**************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence
MCESSPSLHH GQMQPSPSSP RAPPPTAAQA SGYKHFCRVC NKGFTCGSAL GGHMRAHGVG 60 DGDGLGADDD DDDDDDSLGD EAVRRARGGA DDPWNAGGPS SSGAATHVYE LRTNPNRVTR 120 SRQVCKNCGK EFTSWEHFLE HGKCSSGEDD DDEDDVDRSL QPWSPSPEAD GEEDPAPAAG 180 WLKGKRSRRC KGTGVDLSPT PSACTAGEEE DLANCLVMLS SSKVDQAGVT EAEQPSSSSA 240 SKEHKRLITF MEPTTYVLDT VMALPPPAPA PQYVSTVPRG MFECKACKKV FSSHQALGGH 300 RASHKKVKGC FAAKLESNAA EVAEPSHHAE VADRSEDNPA KATSDARRNV HASMDGDGNA 360 GTSDAAAELS MAIVPIEPPV AALAAAPLKK KGKMHECSVC HRLFTSGQAL GGHKRCHWLT 420 SSSADHTASV PPLADDLVPL SFRPMLDAPE PALDLSIAAN PPLLASAATV RPKVGGSSFH 480 LDAPPPVYIP SSPAIPSQRN KATTTTGSQN ANDAVGLSTA AAEDEADSTT VKRARLSDLK 540 DVSMAGETTP WLQVGIGSSS RGGADDNDKE

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence

MCESSPSLHH GQMQPSPSSP RAPPPTAAQA SGYKHFCRVC NKGFTCGSAL GGHMRAHGVG  60
DGDGLGADDD DDDDDDSLGD EAVRRARGGA DDPWNAGGPS SSGAATHVYE LRTNPNRVTR  120
SRQVCKNCGK EFTSWEHFLE HGKCSSGEDD DDEDDVDRSL QPWSPSPEAD GEEDPAPAAG  180
WLKGKRSRRC KGTGVDLSPT PSACTAGEEE DLANCLVMLS SSKVDQAGVT EAEQPSSSSA  240
SKEHKRLITF MEPTTYVLDT VMALPPPAPA PQYVSTVPRG MFECKACKKV FSSHQALGGH  300
RASHKKVKGC FAAKLESNAA EVAEPSHHAE VADRSEDNPA KATSDARRNV HASMDGDGNA  360
GTSDAAAELS MAIVPIEPPV AALAAAPLKK KGKMHECSVC HRLFTSGQAL GGHKRCHWLT  420
SSSADHTASV PPLADDLVPL SFRPMLDAPE PALDLSIAAN PPLLASAATV RPKVGGSSFH  480
LDAPPPVYIP SSPAIPSQRN KATTTTGSQN ANDAVGLSTA AAEDEADSTT VKRARLSDLK  540
DVSMAGETTP WLQVGIGSSS RGGADDNDKE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	388	394	LKKKGKM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17180.1	7e-21	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G19250.1