PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G19030.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 752aa MW: 83424.5 Da PI: 7.0578

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G19030.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.8	1.7e-10	31	76	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde l++ v+ +G+ +W++I ++ + Rt+k+c++rw + ONIVA04G19030.1 31 KGPWMAEEDEVLLEHVRTHGPMDWSSIRSKGLLPRTGKSCRLRWVN 76 79****************99*8876677********87 PP
2	Myb_DNA-binding	41.8	2.4e-13	87	127	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T+eE+ +++ +q+G++ W++Ia +++ gRt++++k++w ONIVA04G19030.1 87 KFTAEEERVVIELQAQFGNK-WARIATYLQ-GRTDNDVKNFWS 127 79****************.*****.*********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence
MARAPGGVRR RSGRRGAGGG GAGGGGEALR KGPWMAEEDE VLLEHVRTHG PMDWSSIRSK 60 GLLPRTGKSC RLRWVNKLRP NLKSGCKFTA EEERVVIELQ AQFGNKWARI ATYLQGRTDN 120 DVKNFWSTRQ KRLARLLRGP LPAARPNKHN SGKGKAPSSS SLDSQTATFH QSSASLDQAS 180 LEGNSLGWQC REAAPFMGYD QACSGFFAFE GPLPLQLLPP ADGEASSSNA AQSAPPPLLF 240 DQPPYPLINF PGWPERYVDV GHGFVDAGAM DGLAYQELLP MVQSVPMIMP FFGMECAHDA 300 VKHGAFDDLP PNMFDDAVDQ PPPPPPPPPP PSPSPSPSRD DVLSNNTKYY EVLGVPKTAS 360 KDELKKAYRK AAIKNHPDKG GDPEKFKELS QAYEVLTDPE KRDIYDQYGE DALKDGMGGG 420 SDFHNPFDIF EQFFGGGAFG GSSSRVRRQR RGEDVVHTLK VSLEDVYNGS MKKLSLSRNI 480 LCPKCKGKGT KSEAPATCYG CHGVGMRNIM RQIGLGMIQH MQTVCPECRG SGEIISDRDK 540 CTNCRASKVI QEKKVLEVHI EKGMQHGQKI VFQGEADEAP DTVTGDIVFI LQVKVHPRFK 600 RKYDDLFIER TISLTEALCG FQFILTHLDS RQLLIKANPG EIIKPGQHKA INDEGMPHHG 660 RPFMKGRLFV EFNVEFPESG VLSRDQCRAL EMILPPKPGH QLSDMDLDQC EETTMHDVNI 720 EEEMRRKQYQ RKQEAYDEDE EEDAPRVQCA QQ

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence

MARAPGGVRR RSGRRGAGGG GAGGGGEALR KGPWMAEEDE VLLEHVRTHG PMDWSSIRSK  60
GLLPRTGKSC RLRWVNKLRP NLKSGCKFTA EEERVVIELQ AQFGNKWARI ATYLQGRTDN  120
DVKNFWSTRQ KRLARLLRGP LPAARPNKHN SGKGKAPSSS SLDSQTATFH QSSASLDQAS  180
LEGNSLGWQC REAAPFMGYD QACSGFFAFE GPLPLQLLPP ADGEASSSNA AQSAPPPLLF  240
DQPPYPLINF PGWPERYVDV GHGFVDAGAM DGLAYQELLP MVQSVPMIMP FFGMECAHDA  300
VKHGAFDDLP PNMFDDAVDQ PPPPPPPPPP PSPSPSPSRD DVLSNNTKYY EVLGVPKTAS  360
KDELKKAYRK AAIKNHPDKG GDPEKFKELS QAYEVLTDPE KRDIYDQYGE DALKDGMGGG  420
SDFHNPFDIF EQFFGGGAFG GSSSRVRRQR RGEDVVHTLK VSLEDVYNGS MKKLSLSRNI  480
LCPKCKGKGT KSEAPATCYG CHGVGMRNIM RQIGLGMIQH MQTVCPECRG SGEIISDRDK  540
CTNCRASKVI QEKKVLEVHI EKGMQHGQKI VFQGEADEAP DTVTGDIVFI LQVKVHPRFK  600
RKYDDLFIER TISLTEALCG FQFILTHLDS RQLLIKANPG EIIKPGQHKA INDEGMPHHG  660
RPFMKGRLFV EFNVEFPESG VLSRDQCRAL EMILPPKPGH QLSDMDLDQC EETTMHDVNI  720
EEEMRRKQYQ RKQEAYDEDE EEDAPRVQCA QQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	2e-54	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G19030.1