PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G17990.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 310aa    MW: 33252.1 Da    PI: 7.0209
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G17990.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.1e-161473148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT............TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg............kgRtlkqcksrwqkyl 48
                     +g+WT++Ed+llvd+v+  G+g+W++ ++  g            ++R++k+c++rw +yl
  ONIVA04G17990.1 14 KGPWTPDEDKLLVDYVQANGSGNWRLLPKLAGearvrdrwvragLNRCGKSCRLRWTNYL 73
                     79********************************************************97 PP
2Myb_DNA-binding52.21.4e-1679122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE++ ++++++  G++ W+ Ia+ ++ gRt++++k++w++
  ONIVA04G17990.1  79 RGPFTPEEHKSILQLHAIVGNK-WSMIAAQLP-GRTDNEIKNYWNT 122
                      89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MGRTPCCDSK VLKKGPWTPD EDKLLVDYVQ ANGSGNWRLL PKLAGEARVR DRWVRAGLNR  60
CGKSCRLRWT NYLRPDIKRG PFTPEEHKSI LQLHAIVGNK WSMIAAQLPG RTDNEIKNYW  120
NTNVKKQLRQ GQAAAVGEQA ALASLGGGAA SCPAARHMAQ WETARLEAEA RLSLLSGTTS  180
VATASVAASS SSSSTAAAGG AEAPPDIYLR LWNSEVGDSF RKSARSAARE DQEPANASDE  240
AAPVSATFAR PGDDSSAASN VTAAAAADEY QVFLDLAAED FELFHGRHGG FPLFPAVDML  300
GETSLYTAFD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.18e-63MYB family protein