PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G15770.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CO-like
Protein Properties Length: 331aa    MW: 34418.1 Da    PI: 4.9324
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G15770.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box248.1e-082056437
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                     r C+ ++ + ++lfC+ +  +lC+ C    H g    H
  ONIVA04G15770.1 20 RACDACGGEAARLFCRADAAFLCAGCDARAH-GpgsrH 56
                     68*************************9999.545556 PP
2zf-B_box22.91.7e-0759103341
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                       + C+ +e+ ++   C+ +   lC+ C   +H+       H++ p
  ONIVA04G15770.1  59 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 103
                      679*****************************6688888898877 PP
3CCT67.73.1e-23239282144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  ONIVA04G15770.1 239 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 282
                      9*****************************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MEGDDKSAVV GGAYWGLAAR ACDACGGEAA RLFCRADAAF LCAGCDARAH GPGSRHARVW  60
LCEVCEHAPA AVTCRADAAA LCAACDADIH SANPLARRHE RLPVAPFFGA LADAPKPGSG  120
AHGGDAAAAD DDGSNDAEAA SWLLPEPDHG QKDGAVGATD ELYADSDPYL DLDFARSMDD  180
IKAIGVQNGP PELDITGGKL FYSDHSMNHS VSSSEAAVVP DAAAGGGAPM PVVSRGRERE  240
ARLMRYREKR KSRRFEKTIR YASRKAYAET RPRIKGRFAK RTKGGAGADA DADADGEDEE  300
MYSSAAAAVA ALMAPGGSDA DYGVDGVVPT F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.14e-48CO-like family protein