PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G13130.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 346aa MW: 36463.9 Da PI: 7.6649

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G13130.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.1	2e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++q+G g+W++ +++ g+ R++k+c++rw +yl ONIVA04G13130.1 14 KGPWTPEEDQKLLAYIEQHGHGCWRSLPSKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.1	7.4e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l ONIVA04G13130.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGRSPCCEKE GLKKGPWTPE EDQKLLAYIE QHGHGCWRSL PSKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG 120 IDPVTHKPRS DVAGAGGGGG GAAGGAAGAQ HAKAAAHLSH TAQWESARLE AEARLAREAK 180 LRALAASATP GAPHLPAPPA SAAAAAAAAH GLDSPTSTLS FSESAVLATV LEAHGAAAAA 240 AARAAMQPMQ AYDEACKDQH WGDVDAADVG FPGAGAGFTG LLLEGSLNQI PRPAGRDAEA 300 DGEFQETEEE KNYWNSILNL VNSSSAPMST AVVVPASHAY SPAPDF

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGRSPCCEKE GLKKGPWTPE EDQKLLAYIE QHGHGCWRSL PSKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTHKPRS DVAGAGGGGG GAAGGAAGAQ HAKAAAHLSH TAQWESARLE AEARLAREAK  180
LRALAASATP GAPHLPAPPA SAAAAAAAAH GLDSPTSTLS FSESAVLATV LEAHGAAAAA  240
AARAAMQPMQ AYDEACKDQH WGDVDAADVG FPGAGAGFTG LLLEGSLNQI PRPAGRDAEA  300
DGEFQETEEE KNYWNSILNL VNSSSAPMST AVVVPASHAY SPAPDF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01140.1	4e-93	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G13130.1