PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G11660.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 353aa    MW: 39410.1 Da    PI: 9.2321
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G11660.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.2e-06283306126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y+ e Cr++++   C++ ++C+FaH+
  ONIVA04G11660.1 283 YGVEVCRDYLK-NMCNR-ESCRFAHP 306
                      899********.*****.*******9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
MASAETPNPD AEIPNTDAAA AADPAAAAAA TDPAAAGSPS PPLPPRKRRL SPTPSPTRRS  60
SRSRSRSRSR SPRRGRSRSR SRSRSRGRSA SPRYPDGKRR RHNDLNVEVC RDFLRDRCAR  120
ADIECKYAHP HPTVAVDRDS KVTACADSLR NNCFRGRTCR YYHPPPHIQE SLLRSIGVED  180
PKVKMVCRDF TRGRCSRSAN ECRFLHHSPL EDCAIVCQDF LRGRCDRKSC RYSHVMAHPM  240
PPPMRDIPMQ YPDMVYMPPP APLGVPMMMP PPSAPAAFSG NNYGVEVCRD YLKNMCNRES  300
CRFAHPDLNN EFAVILSEEN AIDLPVAFTI HLQAQILLDK CPALLPLLPL CCC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16270RSRSRSRSR
27484RGRSRSRSRSR
37482RSRSRSRSR
47686RGRSRSRSRSR
57684RSRSRSRSR
67888RGRSRSRSRSR
77886RSRSRSRSR
88088RSRSRSRSR