PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G10330.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 284aa    MW: 30966 Da    PI: 11.0742
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G10330.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.2e-083761227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     k +lC+ +++ G C+ G  C++aHg+
  ONIVA04G10330.1 37 KSVLCMKWRE-GRCHNGVACRYAHGE 61
                     678*******.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MDSAAAERPS SYAVNFPPLL PAPAPAVAGA MGVANHKSVL CMKWREGRCH NGVACRYAHG  60
EEDQRIVPEM RVGGGGTSMH ARSSPPRDGA SSGSTASIAM AACRIEEQRH GRGGESFILP  120
RSRRKRQYTE AWAARGGAAR GWWGEELWRA AGEGQRAGSG KRSDARAAPP ATAHEEVPGR  180
RRASAFIMSG FKSSQAEVTE STPRRLLTPP SNRHADWRRL LDAAVARVLD LFRLGYLFSP  240
RWIHLWHRLP LYLHDRQFTT PSIPAGNVAQ AITNVLELHV GNGV