PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA04G06780.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 972aa MW: 109686 Da PI: 4.8776

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA04G06780.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.1	9.7e-14	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l ONIVA04G06780.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.8	1.6e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l ONIVA04G06780.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 972 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDTRQR KRKRKGIDYN AEIPFEKRPP PGFYDTVGED RPLEHVQFPT 240 TIEELEGKRR VDIEAQLRKQ DIARNKILQR QDAPAAIMQA NRLNDPEAVT KRSKLMLPPP 300 QISDHELEEI AKMGNAGDPS LVEELGEGST ATRALLSSYS QTPRLGMTPL RTPQRTPAGK 360 GDAIMMEAEN LARLRESQTP LLGGDNPELH PSDFSGVTPR KKEMQTPNPM ATPLASPGPG 420 ATPRIGMTPS RDGSSFGLTP KSTPFRDELR INEEMDMQDT AKLELRRQAE LRKSLRSGFA 480 SIPQPKNEYQ IVMPPITEEE KEEAEEKIEE DMSDRLARER AEEQARQEAL LRKRSKVLQR 540 SLPRPPAASI EILRQTLIKG GESRSRSTFV PPTSLEQADE LINEELLRLL EHDNAKYPLD 600 EKTQKDKKKG SKRQANGTPS VPEIEDFDED ELKEANSMLE EEVQYLRVAM GHESESLEDF 660 VKAHDACQED LMFFPNNNSY GLASVAGNSD KIAALQYEFE IVKKRMDDEA KKASRLEQKI 720 KLLTQGYQVR AGKLWSQVQD TFKQMDTSAT ELECFQELQK QEQMAASYRI RNLTEEVNKQ 780 KALERTLQSR YGDLLTSYKR IQEQLEEHKR QLMIQEEMEA QKRAQEEEME AQKRTQAEEE 840 KEAAKAEEEA RKMDRAADEE AAGSKQVNED QMDVDNSNAD GDEFVGPIPP GPGTQGDDNV 900 VAVEENSSSQ GGDTATTEDG SCGMIDASKS GGQDHIDSKD ELPTVGASLD DGSAAASSDQ 960 DVSTEVNATV PE

Sequence ? help Back to Top

Protein Sequence Length: 972 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDTRQR KRKRKGIDYN AEIPFEKRPP PGFYDTVGED RPLEHVQFPT  240
TIEELEGKRR VDIEAQLRKQ DIARNKILQR QDAPAAIMQA NRLNDPEAVT KRSKLMLPPP  300
QISDHELEEI AKMGNAGDPS LVEELGEGST ATRALLSSYS QTPRLGMTPL RTPQRTPAGK  360
GDAIMMEAEN LARLRESQTP LLGGDNPELH PSDFSGVTPR KKEMQTPNPM ATPLASPGPG  420
ATPRIGMTPS RDGSSFGLTP KSTPFRDELR INEEMDMQDT AKLELRRQAE LRKSLRSGFA  480
SIPQPKNEYQ IVMPPITEEE KEEAEEKIEE DMSDRLARER AEEQARQEAL LRKRSKVLQR  540
SLPRPPAASI EILRQTLIKG GESRSRSTFV PPTSLEQADE LINEELLRLL EHDNAKYPLD  600
EKTQKDKKKG SKRQANGTPS VPEIEDFDED ELKEANSMLE EEVQYLRVAM GHESESLEDF  660
VKAHDACQED LMFFPNNNSY GLASVAGNSD KIAALQYEFE IVKKRMDDEA KKASRLEQKI  720
KLLTQGYQVR AGKLWSQVQD TFKQMDTSAT ELECFQELQK QEQMAASYRI RNLTEEVNKQ  780
KALERTLQSR YGDLLTSYKR IQEQLEEHKR QLMIQEEMEA QKRAQEEEME AQKRTQAEEE  840
KEAAKAEEEA RKMDRAADEE AAGSKQVNED QMDVDNSNAD GDEFVGPIPP GPGTQGDDNV  900
VAVEENSSSQ GGDTATTEDG SCGMIDASKS GGQDHIDSKD ELPTVGASLD DGSAAASSDQ  960
DVSTEVNATV PE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIDTRQRKRKRK
2	200	205	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA04G06780.1