PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA03G37780.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

TCP

Protein Properties

Length: 414aa MW: 42449.6 Da PI: 7.3706

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G37780.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.7	1.4e-36	49	164	1	105
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasec..eaessss 80 a+g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LGfd++sk+ieWL+++a pai+ l+++ ++ + +s++ ONIVA03G37780.1 49 ATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTLPSLdpaafaaiphaaA----ADAapTRRRSQQ 138 5899*************************************************************8888876643321....222232333333 PP TCP 81 sasnsssgkaaksaa.kskksqksaa 105 ++++ s+++ ++s+ +sk s+k+ + ONIVA03G37780.1 139 QQQQLSNKSGCSSTSeTSKGSDKEVT 164 33333333333333323333333333 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MEAAVGDGEG GGGGGGRGKR GRGGGGGEMV EAVWGQTGST ASRIYRVRAT GGKDRHSKVY 60 TAKGIRDRRV RLSVATAIQF YDLQDRLGFD QPSKAIEWLI NAASPAIDTL PSLDPAAFAA 120 IPHAAAADAA PTRRRSQQQQ QQLSNKSGCS STSETSKGSD KEVTVASAPA QAASFTELLI 180 AGVAASSAGG GAIGNGADCV GIAHPGKGGA EGASTYGFSA ASSFGDAPPI GMVPAPPFNF 240 SAPGADMAAH YPLAQDQLAA PPPPAGGDYN LNFSMSSGFL GANRGTLQSN SPSNMSGHHH 300 HHHQQQLQRL DGSTISFLLG HAAAAAHPAA SEGQITSTAA LQLNASSKGT EDIIIRLIVV 360 TFPARAHRGE LLQVYCDDCP CSFSWVIVLL CCFLAIMNTL PLLLPAIAIT QTIL

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MEAAVGDGEG GGGGGGRGKR GRGGGGGEMV EAVWGQTGST ASRIYRVRAT GGKDRHSKVY  60
TAKGIRDRRV RLSVATAIQF YDLQDRLGFD QPSKAIEWLI NAASPAIDTL PSLDPAAFAA  120
IPHAAAADAA PTRRRSQQQQ QQLSNKSGCS STSETSKGSD KEVTVASAPA QAASFTELLI  180
AGVAASSAGG GAIGNGADCV GIAHPGKGGA EGASTYGFSA ASSFGDAPPI GMVPAPPFNF  240
SAPGADMAAH YPLAQDQLAA PPPPAGGDYN LNFSMSSGFL GANRGTLQSN SPSNMSGHHH  300
HHHQQQLQRL DGSTISFLLG HAAAAAHPAA SEGQITSTAA LQLNASSKGT EDIIIRLIVV  360
TFPARAHRGE LLQVYCDDCP CSFSWVIVLL CCFLAIMNTL PLLLPAIAIT QTIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	1e-33	TCP family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G37780.1