PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G32670.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 620aa    MW: 65096 Da    PI: 4.9556
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G32670.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.52e-1402366161374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPil 91 
                      lv++Ll+cAeav+++++++a+al++++ +la+++g +m+++aayf eALa+r++r        ++p +++     ++++a+ l   f+e +P+l
  ONIVA03G32670.1 236 LVHALLACAEAVQQENFAAAEALVKQIPTLAASQGGAMRKVAAYFGEALARRVYR--------FRPADST---LLDAAFADLLhahFYESCPYL 318
                      689****************************************************........5565555...3333333333334******** PP

             GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                      kf+h+taNqaIlea++g++rvH++Df+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+++g++La+fA++++v+f+++ lva +
  ONIVA03G32670.1 319 KFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAAT 412
                      ********************************************************************************************** PP

             GRAS 186 ledleleeL......rvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                      l+dle+ +L      +       E++aVn+v++lhrll+++++le+    vL +v  ++P++v+vveqea+hns+sFl+rf+e+l+yys++fds
  ONIVA03G32670.1 413 LADLEPFMLqpegeaD--AneePEVIAVNSVFELHRLLAQPGALEK----VLGTVHAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDS 500
                      *********6555442..15579***********************....******************************************** PP

             GRAS 271 leak...........lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352
                      le +           ++    +++++++++lgr+i+nvvacegaer+erhetl++Wr+rl++aGF+pv+l+++a+kqa++ll+ ++ +dgyrve
  ONIVA03G32670.1 501 LEGGssgqaelsppaAGGGGGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGRAGFEPVHLGSNAYKQASTLLALFAgGDGYRVE 594
                      *88878888875554444449************************************************************************* PP

             GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                      e++g+l+lgW++rpL+++SaWr
  ONIVA03G32670.1 595 EKEGCLTLGWHTRPLIATSAWR 616
                      *********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    
MKREYQEAGG SSADMGSCKD KVMAGAAGEE EDVDELLAAL GYKVRSSDMA DVAQKLEQLE  60
MAMGMGGVSA PGAADDGFVS HLATDTVHYN PSDLSSWVES MLSELNAPLP PIPPAPLAAR  120
HASTSSTVTG GGGSGFFELP AAADSSSSTY ALRPISLPVV ATADPSAADS ARDTKRMRTG  180
GGSTSSSSSS SSSLGGGASR GSVVEAAPPA TQGAAAANAP AVPVVVVDTQ EAGIRLVHAL  240
LACAEAVQQE NFAAAEALVK QIPTLAASQG GAMRKVAAYF GEALARRVYR FRPADSTLLD  300
AAFADLLHAH FYESCPYLKF AHFTANQAIL EAFAGCRRVH VVDFGIKQGM QWPALLQALA  360
LRPGGPPSFR LTGVGPPQPD ETDALQQVGW KLAQFAHTIR VDFQYRGLVA ATLADLEPFM  420
LQPEGEADAN EEPEVIAVNS VFELHRLLAQ PGALEKVLGT VHAVRPRIVT VVEQEANHNS  480
GSFLDRFTES LHYYSTMFDS LEGGSSGQAE LSPPAAGGGG GTDQVMSEVY LGRQICNVVA  540
CEGAERTERH ETLGQWRNRL GRAGFEPVHL GSNAYKQAST LLALFAGGDG YRVEEKEGCL  600
TLGWHTRPLI ATSAWRVAAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein