PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA03G28290.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LSD

Protein Properties

Length: 319aa MW: 33689.7 Da PI: 9.4139

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G28290.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	41.3	2.5e-13	131	155	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L+YP GApsV+CalC+++ ONIVA03G28290.1 131 CHGCRSVLRYPSGAPSVCCALCQAI 155 ***********************97 PP
2	zf-LSD1	38.6	1.7e-12	172	196	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A VRC++C tV ONIVA03G28290.1 172 CGGCRTLLMYTRNADTVRCSCCSTV 196 ***********************99 PP
3	zf-LSD1	47.9	2.2e-15	210	233	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Crt+L+YP+GApsV+Ca+C+ ONIVA03G28290.1 210 CGQCRTTLMYPYGAPSVKCAICHY 233 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MTSRAEPYFP RPPSSSLPSS PFPLCSISFL PPVVCVSPQI NPIQNQPPRR PPPQPHPPRD 60 SSSSSSSPAR GAAALLLVLG RSPRSWRASL PWSHHHHYSL QARGGWSTLR WSRLLPAAAA 120 AAPGMQSQIV CHGCRSVLRY PSGAPSVCCA LCQAITTVPP PAPVMEMAHL ICGGCRTLLM 180 YTRNADTVRC SCCSTVNLVR PVNNIAHVSC GQCRTTLMYP YGAPSVKCAI CHYITNTGMN 240 TVAPTPSPMP TSSGSSYNAP PSGSSYNAPP SGSSYNAPPP TSAPTSRPQN VTVVVENPMT 300 VDEKGKLVSN VVVGVTTGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	1e-53	LSD family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G28290.1