PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA03G21580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 311aa MW: 32756.9 Da PI: 8.3034 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 3e-17 | 16 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEde+lv +v q+Gg+ +W++ +++ g++R+ k+c++rw +yl ONIVA03G21580.1 16 KGPWTREEDEKLVAYVDQHGGHgSWRSLPKRAGLNRCCKSCRLRWINYL 64 79*******************9*************************97 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.6e-17 | 70 | 113 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE++ ++ ++ lG++ W+tIa +++ gRt++++k++w++ ONIVA03G21580.1 70 RGNFTPEEEQAIITLHSVLGNK-WSTIATRLP-GRTDNEIKNYWNT 113 89********************.*********.***********97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 311 aa Download sequence |
MGRLRPPCCD ESSVKKGPWT REEDEKLVAY VDQHGGHGSW RSLPKRAGLN RCCKSCRLRW 60 INYLRPDIKR GNFTPEEEQA IITLHSVLGN KWSTIATRLP GRTDNEIKNY WNTRLKKRLI 120 GAGIDPNTHR ARPRPPAPGD LATALPQLVA LASLAVDLAV GHAAAAGGAW GAVDYQQADA 180 AAAQLQCLQH LLLQPQTTPA TSATSGGGGH PTELNAASSF LTQAVASYAA AAATPLPSLV 240 VPGGSQPLEL KRWQDHIGGD HVGAVSPFAG AATVTGHHGG GGGGEFLPSE LTALLCSANA 300 IGDLQSSNLD F |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16770.2 | 4e-69 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | ONIVA03G21580.1 |