PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G19990.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 306aa    MW: 32489.6 Da    PI: 6.3526
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G19990.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  l+ +v+++G+g+W++++ + g+ R+ k+c++rw +yl
  ONIVA03G19990.1 14 KGPWTPEEDMVLASYVQEHGPGNWRAVPPRTGLLRCSKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding445.3e-1467112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++  E+ l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  ONIVA03G19990.1  67 RGGFSHHEERLILHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      7889******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MGRPPCCEKE GVKKGPWTPE EDMVLASYVQ EHGPGNWRAV PPRTGLLRCS KSCRLRWTNY  60
LRPGIRRGGF SHHEERLILH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLALTS  120
SSSPPTPTTP LVARGQWERK LQTDIDLARR ALRDALSVDD AASPAMISSG PPAPAAAAAY  180
ALSERNISVM LSGWAAPPPA RKELSACNPA AATTTPGGAA AESASTAGTS SELTADCCSG  240
GGDSSASNCL PSSMLLACDD GDATATAAGE APLSAIESWL LLDDSGEPQL ALDEQLLDVA  300
LRNYAF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.21e-84MYB family protein