PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G11340.2
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YC
Protein Properties Length: 264aa    MW: 27864.4 Da    PI: 6.0243
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G11340.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC169.44.4e-53631681101
            NF-YC   1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                      ql++fw++q     + +a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa++rtd+f
  ONIVA03G11340.2  63 QLQAFWAYQrqeaeRASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIARTDVF 156
                      89*****997665555689*************************************************************************** PP

            NF-YC  90 dflvdivprdel 101
                      dflvdivpr+e 
  ONIVA03G11340.2 157 DFLVDIVPREEA 168
                      *********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MAILHSTHSY KSTVIKVTMD NQQLPYAGQP AAAGAGAPVP GVPGAGGPPA VPHHHLLQQQ  60
QAQLQAFWAY QRQEAERASA SDFKNHQLPL ARIKKIMKAD EDVRMISAEA PVLFAKACEL  120
FILELTIRSW LHAEENKRRT LQRNDVAAAI ARTDVFDFLV DIVPREEAKE EPGSALGFAA  180
GGPAGAVGAA GPAAGLPYYY PPMGQPAPMM PAWHVPAWDP AWQQGAAPDV DQGAAGSFSE  240
EGQQGFAGHG GAAAGFPPAP PSSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138144RRTLQRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-63NF-YC family protein