PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA03G06470.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 542aa    MW: 60514.9 Da    PI: 6.2588
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA03G06470.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.55.6e-1281655332374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++++ +c +av++++    + l+++l++++s +g+pmqRl ay++e+L arl+++++ lyk+l+++e +   s e +++++l++e++P++kf++
  ONIVA03G06470.1 165 KQVIAACGKAVDENS-WYRDLLISELRNMVSISGEPMQRLGAYMLEGLVARLSSTGHALYKSLKCKEPT---SFELMSYMHLLYEICPFFKFGY 254
                      677888999998854.4568899*********************************************9...99999***************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      + aN aI eav+ge+ vHiiDf+i qG QW++++qaLa+Rp+gpp lRiTg+++++s   +   l  +g+rL ++A+++g+pfefn+ v  + +
  ONIVA03G06470.1 255 MSANGAIAEAVKGENFVHIIDFQIAQGSQWATMIQALAARPGGPPYLRITGIDDSNSAhaRGGGLDIVGRRLFNIAQSCGLPFEFNA-VPAASH 347
                      ******************************************************8888889999***********************.799999 PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      ++ le+L++++gE+++Vn+++qlh+++desv +e++rd++L++vk+lsP+vv++veqea++n+++F++r le+l+yy+a+f+++++  pr++++
  ONIVA03G06470.1 348 EVMLEHLDIRSGEVIVVNFAYQLHHTPDESVGIENHRDRILRMVKGLSPRVVTLVEQEANTNTAPFFNRYLETLDYYTAMFEAIDVACPRDDKK 441
                      999******************************************************************************************* PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      ri+ E+++++r+ivn++acegaer+erhe ++kWr+rl++aGF+p+pls  +++++k ll  ++s  y++ee++g+l+lgWk+r+Lv+ SaWr
  ONIVA03G06470.1 442 RISTEQHCVARDIVNLIACEGAERVERHEPFGKWRARLSMAGFRPYPLSALVNNTIKKLLDSYHSY-YKLEERDGALYLGWKNRKLVVSSAWR 533
                      ****************************************************************66.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    
MQASNRPYRY PDNSQIPYYS RSSMHVGQNG TYHVQQNHED LYASSDDGSQ NGNSKAQGLQ  60
AQYCTLDSSS GNFMYPAHSS TSSHISGSPI SQQDSHSEHT SGSPASASCV TEVPGLRFTT  120
IEEIENAMFG PEPDTVSSDC SLLTDSAFYQ DNWREHLGIN TGDLKQVIAA CGKAVDENSW  180
YRDLLISELR NMVSISGEPM QRLGAYMLEG LVARLSSTGH ALYKSLKCKE PTSFELMSYM  240
HLLYEICPFF KFGYMSANGA IAEAVKGENF VHIIDFQIAQ GSQWATMIQA LAARPGGPPY  300
LRITGIDDSN SAHARGGGLD IVGRRLFNIA QSCGLPFEFN AVPAASHEVM LEHLDIRSGE  360
VIVVNFAYQL HHTPDESVGI ENHRDRILRM VKGLSPRVVT LVEQEANTNT APFFNRYLET  420
LDYYTAMFEA IDVACPRDDK KRISTEQHCV ARDIVNLIAC EGAERVERHE PFGKWRARLS  480
MAGFRPYPLS ALVNNTIKKL LDSYHSYYKL EERDGALYLG WKNRKLVVSS AWRFFRGFLV  540
DA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein