PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA03G03580.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 259aa MW: 26737.6 Da PI: 6.3023

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA03G03580.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.7	1.1e-39	7	106	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasnv+kll++lp +r++a+ ++ yeA+ar+rdP+yG+v++i++lqqq+++l+a+ ONIVA03G03580.1 7 PCGACKFLRRKCVRGCVFAPYFCHEQgAAHFAAIHKVFGASNVSKLLAHLPLADRPEAAVTISYEAQARLRDPIYGCVAHIFALQQQVMTLQAQ 100 7***********************89**************************************************************** PP DUF260 94 lallke 99 la+lk+ ONIVA03G03580.1 101 LASLKA 106 *99886 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence
MTGFGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HKVFGASNVS KLLAHLPLAD 60 RPEAAVTISY EAQARLRDPI YGCVAHIFAL QQQVMTLQAQ LASLKAAAAQ GIHHQDVGAT 120 TKGGYMSAAA TAADDQLGYG GYDQWCGSNG GGAPAASQPG AYSSNGGAGH GHDSITALLA 180 AGSDYMQHSL YHAFEHSEGA GAVDDGHAAA AAFEAAAESS SCGMAASFAA DESVWRSSSS 240 GYQDCEDLQS VAYAYLNRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	7e-57	LBD family protein

Link Out ? help Back to Top
Ensembl	ONIVA03G03580.1