PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G29380.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 688aa    MW: 72017.6 Da    PI: 6.078
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G29380.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS103.82.4e-323534903144
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L ++A+a ++g+   a+++Larl+++  + g+p+ R a+y++eAL   la+  s+  ++  +s+    +++ +laa+k fs++sP+l+f+++
  ONIVA02G29380.1 353 DELAAAAKATEAGNSVGAREILARLNQQLPQLGKPFLRSASYLKEALLLALAD--SHHGSSGVTSPL---DVALKLAAYKSFSDLSPVLQFTNF 441
                      7899*************************************************..444444555555...499********************* PP

             GRAS  97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRi 144
                      ta qa+l+++ g   +++H+iDfd++ G+QW+++lq+La R+ g+ +lRi
  ONIVA02G29380.1 442 TATQALLDEIGGMatSCIHVIDFDLGVGGQWASFLQELAHRR-GAGELRI 490
                      ***********998899***********************96.5567776 PP
2GRAS129.14.9e-40485675169374
             GRAS 169 AeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                      A el++pfefn++   +l+++++ eL  ++ +E++aV+l +          +     +++L+lvk+l Pkvvv +++  d+ + +F ++fl+++
  ONIVA02G29380.1 485 AGELRIPFEFNAV---SLDAFNPAELISSSgDEVVAVSLPVGCSARA---PP----LPAILRLVKQLCPKVVVAIDHGGDRADLPFSQHFLNCF 568
                      889*********8...99*****999777779********9777665...44....556*********************************** PP

             GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                      + ++ l+dsl+a  + +++ + k+Er+l++++++++v  ++++     +++  Wr+ + + GFkpv+ s+ a++qa++ll++v+++g++ve++ 
  ONIVA02G29380.1 569 QSCVFLLDSLDAA-GIDADSACKIERFLIQPRVEDAVIGRHKA-----QKAIAWRSVFAATGFKPVQPSNLAEAQADCLLKRVQVRGFHVEKRG 656
                      **********888.7899*******************999888.....78899***************************************** PP

             GRAS 356 gslvlgWkdrpLvsvSaWr 374
                      ++l+l+W++ +Lvs+S+Wr
  ONIVA02G29380.1 657 AALTLYWQRGELVSISSWR 675
                      ******************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    
MRAALFGAER SGVVDLGGIG GGNRGLFWPA GKGGLVVVEP RSVLDCTRSP SPPYSTSTLS  60
SSLGGGSADS TGVAAVSESS TAAAGATKWG APGEHGGGGK EEWGGGCELP PIPGALDVGL  120
VGGEGWDATA TLGNAAGPDQ SFLNWIIGAA GDLEQPGPPL PVLQQPLIDN AGFGIPAVDT  180
MGFSLDHPLS GVASDLSSSG AHTATGGGGK ASLGFGLFSP EATSLEQPPP SMLFHEGIDT  240
KPPLLGAQPQ FLLNHYQPQP PNPAAALFMP LPPFPEHNHQ SPHLQPPLKR HHAIPDDLYL  300
ARNQQQSSAV APGLAYSPPL HGPAPFQLHP SPPPIRGAMK STAAEAAQQQ LLDELAAAAK  360
ATEAGNSVGA REILARLNQQ LPQLGKPFLR SASYLKEALL LALADSHHGS SGVTSPLDVA  420
LKLAAYKSFS DLSPVLQFTN FTATQALLDE IGGMATSCIH VIDFDLGVGG QWASFLQELA  480
HRRGAGELRI PFEFNAVSLD AFNPAELISS SGDEVVAVSL PVGCSARAPP LPAILRLVKQ  540
LCPKVVVAID HGGDRADLPF SQHFLNCFQS CVFLLDSLDA AGIDADSACK IERFLIQPRV  600
EDAVIGRHKA QKAIAWRSVF AATGFKPVQP SNLAEAQADC LLKRVQVRGF HVEKRGAALT  660
LYWQRGELVS ISSWRLEYDM QSNYRCRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196106GGGGKEEWGGG
297107GGGGKEEWGGG
398108GGGGKEEWGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.14e-76GRAS family protein