PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA02G28010.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 320aa    MW: 34461.8 Da    PI: 5.3456
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA02G28010.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l d++ ++G g+W++ +++ g+ R +k+c++rw +yl
  ONIVA02G28010.1 15 KGLWSPEEDQKLRDYILRHGHGCWSALPAKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding54.52.8e-1769113248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g +++eE+e    +++ lG++ W++Iar+++ gRt++++k++w++yl
  ONIVA02G28010.1  69 GVFSPEEEETVMSLHAALGNK-WSRIARHLP-GRTDNEVKNYWNSYL 113
                      789******************.*********.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MGCKSCEKPR PNYRKGLWSP EEDQKLRDYI LRHGHGCWSA LPAKAGLQRN GKSCRLRWIN  60
YLRPGLKHGV FSPEEEETVM SLHAALGNKW SRIARHLPGR TDNEVKNYWN SYLKKRVESG  120
GGKTSQGPPT TPASAASSPA DSDDSHSLQQ KPHEPANSDS SEPAHESSSA SADSSCLTVT  180
TDHPPVSRPH AAVTPKVMFA DWLDMEYICG QVAAAPGLDA AGFAVVGGAA GDQQQQQQQQ  240
VMSQDGSVHQ ADGPSCGVDD SSLQQQQQEG FGGNGGCWDF QEQFDSIDQM QASGGGGGGG  300
FCDLLSMSDF DLWAELERTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.13e-57MYB family protein