PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA02G13200.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 475aa MW: 52422.6 Da PI: 5.9187

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G13200.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.8	3.7e-11	83	120	7	45
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 Ede l++ ++ +G ++W+t+ar ++ gR + qc+ rw ONIVA02G13200.1 83 HEDESLIQMINIYGHNNWETVARAIP-GRNAQQCRVRWK 120 69**********************.*********6 PP
2	Myb_DNA-binding	36	1.6e-11	129	174	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++W+ eE+++l+++ + +G++ W + a+++ gRt +k++w++++ ONIVA02G13200.1 129 KQAWSREEELRLIHVQQIFGNK-WCRMAEHFT-GRTSAAIKEHWRDLR 174 799*****************.****9.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MASRAVEGEG EGEEEGEGKG NLANAPEDSH KHCQGEELEA GQSCKINYQD IMDKCGIEIS 60 EKRRRRWSTK ESCLDFYFII LLHEDESLIQ MINIYGHNNW ETVARAIPGR NAQQCRVRWK 120 FNLDPAISKQ AWSREEELRL IHVQQIFGNK WCRMAEHFTG RTSAAIKEHW RDLRPSLKSK 180 EGVSSKCDGS SGDNQLLSDL RASLKSKGAS SKCDGSSGDN QLLSDLRASL KSKGASSKCD 240 GSSDENKLLS DLRACLKSKQ GASSKCDGSS GENQLLSDLQ ASLMSKQRTS SKYKQGASSK 300 SKQGTSSKSK QGFIDLCENT DTSEGESSEL ICTERPDPDS GEASQRIRDR LNWRKRARKK 360 LVFLSSPVEL KVSAVAESER HLQESKEMSP EVNIVSPPAV LQGFSPEVPS VCEKIVEPPL 420 ADFNQAKNVC SLETSSDPCT LEQHLANVSD LLDMSYIDGL MIIPPAGCPY DGDFI

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MASRAVEGEG EGEEEGEGKG NLANAPEDSH KHCQGEELEA GQSCKINYQD IMDKCGIEIS  60
EKRRRRWSTK ESCLDFYFII LLHEDESLIQ MINIYGHNNW ETVARAIPGR NAQQCRVRWK  120
FNLDPAISKQ AWSREEELRL IHVQQIFGNK WCRMAEHFTG RTSAAIKEHW RDLRPSLKSK  180
EGVSSKCDGS SGDNQLLSDL RASLKSKGAS SKCDGSSGDN QLLSDLRASL KSKGASSKCD  240
GSSDENKLLS DLRACLKSKQ GASSKCDGSS GENQLLSDLQ ASLMSKQRTS SKYKQGASSK  300
SKQGTSSKSK QGFIDLCENT DTSEGESSEL ICTERPDPDS GEASQRIRDR LNWRKRARKK  360
LVFLSSPVEL KVSAVAESER HLQESKEMSP EVNIVSPPAV LQGFSPEVPS VCEKIVEPPL  420
ADFNQAKNVC SLETSSDPCT LEQHLANVSD LLDMSYIDGL MIIPPAGCPY DGDFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	4e-26	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G13200.1