PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

ONIVA02G12460.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 412aa MW: 42022.6 Da PI: 7.826

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA02G12460.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.9	1.8e-13	128	178	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++h +Er+RR+++N+ ++ Lr+l+P + k+ + a+i +v+YIk+Lq ONIVA02G12460.1 128 KMSHITVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 178 789***********************9...9******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MADGGGGGLC ELFSDDHRDI RHVADADLFR ILETWEECIN GGAGGGGGGV SLAGVADQGA 60 AAASTGAGGG ARTTTTTTAA NGRRREGRDE EKGGGGGGGP PAQKKQKGSS SSPAALAAAV 120 GDGDGAAKMS HITVERNRRK QMNEHLAVLR SLMPCFYVKR GDQASIIGGV VDYIKELQQV 180 LRSLEAKKNR KAYADQVLSP RPSPAAAALM VKPTPPISPR FAAAAAAGVP ISPRTPTPGS 240 PYNKHAAAAA TARPPHPAAA TSSCSVAYSM SPAMTPTSSS STTTTTTHEL SPAPAFLPIL 300 DSLVTELAAR GGASCRPLVI PSSAAAIAGI VGVPDVRVEF AGPNLVLKTV SHRAPGQALK 360 IIAALESLSL EILHVSICTV DDATVLSFTI KIGIECELSA EELVQEIQQT FL

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MADGGGGGLC ELFSDDHRDI RHVADADLFR ILETWEECIN GGAGGGGGGV SLAGVADQGA  60
AAASTGAGGG ARTTTTTTAA NGRRREGRDE EKGGGGGGGP PAQKKQKGSS SSPAALAAAV  120
GDGDGAAKMS HITVERNRRK QMNEHLAVLR SLMPCFYVKR GDQASIIGGV VDYIKELQQV  180
LRSLEAKKNR KAYADQVLSP RPSPAAAALM VKPTPPISPR FAAAAAAGVP ISPRTPTPGS  240
PYNKHAAAAA TARPPHPAAA TSSCSVAYSM SPAMTPTSSS STTTTTTHEL SPAPAFLPIL  300
DSLVTELAAR GGASCRPLVI PSSAAAIAGI VGVPDVRVEF AGPNLVLKTV SHRAPGQALK  360
IIAALESLSL EILHVSICTV DDATVLSFTI KIGIECELSA EELVQEIQQT FL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	107	RRREGRDEEKGGGGGGGPPAQKKQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53210.1	2e-41	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA02G12460.1